View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_144 (Length: 299)
Name: NF0412_low_144
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_144 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 4481673 - 4481824
Alignment:
| Q |
79 |
atatatcaaggtttaaaatcacattaatttgcaacagtgattgtggttaatagtttcatgatattcatactgtcattgcatataattgcaaccaaatgtg |
178 |
Q |
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| T |
4481673 |
atatatcaaggtttaaaatcacattaatttgcaacaatgattgtggttaatagtttcat------catactgtctttgcatataatcgcaaccaaatgcg |
4481766 |
T |
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| Q |
179 |
gtagatgcaacctcaaattaagtgcaattacaaagacatcacaacgtttatcttcggcc |
237 |
Q |
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| T |
4481767 |
gttgatgcaacctcaaat-aagtgcaattacaaagacatcacaacgtttatcttcggcc |
4481824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 4481869 - 4481921
Alignment:
| Q |
247 |
acacacataaaacacgtctcttagaaagaaaaagagaacatacatgatatacc |
299 |
Q |
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| T |
4481869 |
acacacataaaacacatctcttagaaagaaaaagagaacataaatgatatacc |
4481921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 4503559 - 4503476
Alignment:
| Q |
143 |
tcatactgtcattgcatataattgcaaccaaatgtggtagatgcaacctcaaattaagtgcaattacaaagacatcacaacgtt |
226 |
Q |
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| T |
4503559 |
tcatactgatattgcatataattgccgcccaatgcggttgatgcaacctcaaacttaatgcaattaccaagacatcacaacgtt |
4503476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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