View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_146 (Length: 298)
Name: NF0412_low_146
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_146 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 33619168 - 33619035
Alignment:
| Q |
88 |
gaagataacaaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccgaacttcatgtggcataacattgtcaagaatgtttgcgataac |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33619168 |
gaagataacaaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataacattgtcaagaatgtttgcgataac |
33619069 |
T |
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| Q |
188 |
acaaagattattatgaattgcacagcaacagcta |
221 |
Q |
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| T |
33619068 |
acaaagattattatgaattgcacagcaacagcta |
33619035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 33628358 - 33628238
Alignment:
| Q |
101 |
agagtcatcacaataacccaaaaagcatagaagacgaaggccccgaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagattatta |
200 |
Q |
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||||||||||||| ||||||| ||||||||| | || ||||| ||||||| |||||||||||| |||||||||||||||||||||||||| || |||| |
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| T |
33628358 |
agagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcatta |
33628259 |
T |
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| Q |
201 |
tgaattgcacagcaacagcta |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
33628258 |
tgaaatgcacagcaacagcta |
33628238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 33609882 - 33609753
Alignment:
| Q |
92 |
ataacaaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccgaacttcatgtggcataacattgtcaagaatgtttgcgataacacaa |
191 |
Q |
| |
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|||| ||| |||||||||||| ||||||| ||||||||| | |||||| || ||||| | ||| ||||||||||||||||||||||| |||| ||||| |
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| T |
33609882 |
ataataaaaagagtcatcacagcaacccaaccagcatagaacaagaaggctccaaacttaaagtgacataacattgtcaagaatgtttgtgatagcacaa |
33609783 |
T |
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| Q |
192 |
agattattatgaattgcacagcaacagcta |
221 |
Q |
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| | |||||||||||| | ||||| ||||| |
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| T |
33609782 |
atactattatgaattgtatagcaatagcta |
33609753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 33596446 - 33596326
Alignment:
| Q |
101 |
agagtcatcacaataacccaaaaagcatagaagacgaaggccccgaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagattatta |
200 |
Q |
| |
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||||||||||| ||||||||| |||||||| | ||| || || ||||| | |||||||| |||||||||||||||||| ||||||||||| | |||| |
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| T |
33596446 |
agagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagatta |
33596347 |
T |
|
| Q |
201 |
tgaattgcacagcaacagcta |
221 |
Q |
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||||||| ||| |||| |||| |
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| T |
33596346 |
tgaattgtacaccaactgcta |
33596326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 33603577 - 33603457
Alignment:
| Q |
101 |
agagtcatcacaataacccaaaaagcatagaagacgaaggccccgaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagattatta |
200 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | ||| || || ||||| | |||||||| |||||||||||||||||| ||||||||||| | |||| |
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| T |
33603577 |
agagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagatta |
33603478 |
T |
|
| Q |
201 |
tgaattgcacagcaacagcta |
221 |
Q |
| |
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||||||| ||| |||| |||| |
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| T |
33603477 |
tgaattgtacaccaactgcta |
33603457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 33623917 - 33623851
Alignment:
| Q |
155 |
tggcataacattgtcaagaatgtttgcgataacacaaagattattatgaattgcacagcaacagcta |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||| ||||||||| |
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| T |
33623917 |
tggcataacatagtcaagaatgtttgcgatagcacaaagaccattatgaaatgcacaacaacagcta |
33623851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 33589274 - 33589154
Alignment:
| Q |
101 |
agagtcatcacaataacccaaaaagcatagaagacgaaggccccgaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagattatta |
200 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | ||| || || ||||| | |||||||| |||||||||||||||||| ||||||| ||| | |||| |
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| T |
33589274 |
agagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacataaacaagatta |
33589175 |
T |
|
| Q |
201 |
tgaattgcacagcaacagcta |
221 |
Q |
| |
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||||||| ||| |||| |||| |
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| T |
33589174 |
tgaattgtacaccaactgcta |
33589154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 33563647 - 33563573
Alignment:
| Q |
147 |
acttcatgtggcataacattgtcaagaatgtttgcgataacacaaagattattatgaattgcacagcaacagcta |
221 |
Q |
| |
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|||||| ||| |||||||||||||||||||| || || |||||||| || ||||||||||||||| || ||||| |
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| T |
33563647 |
acttcaagtgacataacattgtcaagaatgtctgagacaacacaaatatagttatgaattgcacagaaatagcta |
33563573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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