View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_15 (Length: 469)
Name: NF0412_low_15
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 230 - 459
Target Start/End: Original strand, 32604551 - 32604779
Alignment:
| Q |
230 |
cttggaagctttcatgtgatttgggatggagccttagatttctattcatagtgttgaaaacaataagagtaaaaaacaagatggctcagattgcacatac |
329 |
Q |
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| T |
32604551 |
cttggaagctttcatgtgatttgggatggagccttagatttctattcatagtgttgaaaacaataagagtaaaaaacaagatggctcaggttgcacatac |
32604650 |
T |
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| Q |
330 |
gatagaaaatggaaggtcgaacgtacaatgatgttagcaaaatgtgtgacgagatttgacatgggttgaaaccaacattttcnnnnnnngtaaattccca |
429 |
Q |
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| T |
32604651 |
catagaaaatggaaggtcgaacgcacaatgatgttagcaaaatgtgcgacgagatttgacatgggttgaaaccaaca-tttcaaaaaaagtaaattccca |
32604749 |
T |
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| Q |
430 |
agacaaattaaacgacggcacgcgtctctg |
459 |
Q |
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| T |
32604750 |
agacaaattaaacgacggcacgcgtctctg |
32604779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 32604333 - 32604444
Alignment:
| Q |
29 |
ataaaactaatccagtctcaaa--gaatcagagtcccatttcagtttatgttccattctagaaccactccttcaataggcaactaggaccactcaaactt |
126 |
Q |
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| T |
32604333 |
ataaaactaatccaatctcaaacagaatcagagtcccatttcaatttatgttccattctagaaccactccttcaatagggaactaggaccactcaaactt |
32604432 |
T |
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| Q |
127 |
cctaagggacaa |
138 |
Q |
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| T |
32604433 |
cctaagggacaa |
32604444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 32604451 - 32604490
Alignment:
| Q |
130 |
aagggacaagattctaatagggcaacttattacgagggac |
169 |
Q |
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| T |
32604451 |
aagggacaagatcctaataggccaacttattacgagggac |
32604490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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