View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_150 (Length: 293)
Name: NF0412_low_150
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_150 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 49380468 - 49380251
Alignment:
| Q |
49 |
gagatgaaaatagcatttaagctaacttgttttagacccacataactttgtcaacaatggaagtgaaaagtattcaaaggagacagatgacacacgtatt |
148 |
Q |
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| T |
49380468 |
gagatgaaaatagcatttaagctaacttgttttagacccgcataactttgtcaacaatggaagtgaaaagtattcaaaggagacagatgacacacgtatt |
49380369 |
T |
|
| Q |
149 |
caactcatttatttattaatactaataactaactaatcacactttgtgtttctaaagaaagaatccatgtagtcttgaatctaag-ccccttgactcctc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49380368 |
caactcatttatttattaatactaataactaactaatcacactttgtgtttctaaagaaagaatccatgtagtcttgaatctaagcccccttgactcctc |
49380269 |
T |
|
| Q |
248 |
cactaagaggcagaaagt |
265 |
Q |
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|||||||||||||||||| |
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| T |
49380268 |
cactaagaggcagaaagt |
49380251 |
T |
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