View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_151 (Length: 293)
Name: NF0412_low_151
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_151 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 52 - 293
Target Start/End: Original strand, 2795678 - 2795919
Alignment:
| Q |
52 |
agatgaatttgttgacgttcataagaggtaacggagaatatcagaatacaaaattttaaaaaatatggttctaatatggataaaacttctgcaaatcgga |
151 |
Q |
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| T |
2795678 |
agatgaatttgttgacgttcataagaggtaacggagaatatcagaatacaaaatttaaaaaaatatggttctaatatggataaaacttctgcaaatcgga |
2795777 |
T |
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| Q |
152 |
attttgatgttataaattttattctgcagaatacctgtaacaaccgcttccccaatggcacgagctccatcaatccgaaggttgaatagcgaaaagagag |
251 |
Q |
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| T |
2795778 |
attttgatgttataaattttattctgcagaatacctgtaacaaccgcttccccaatggcacgagctccatcaatccgaaggttgaatagcgaaaagagag |
2795877 |
T |
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| Q |
252 |
cagtaagtgatttaccgttgcacgaattttatgatttaatat |
293 |
Q |
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| T |
2795878 |
cagtaagtgatttaccgttgcacgaattttatgatttaatat |
2795919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 48670950 - 48671023
Alignment:
| Q |
197 |
gcttccccaatggcacgagctccatcaatccgaaggttgaatagcgaaaagagagcagtaagtgatttaccgtt |
270 |
Q |
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| T |
48670950 |
gcttcctcaatggcacgagctccatcagtccgaaggatgactggccaaaagggagcggtaagtggtttaacgtt |
48671023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 16391689 - 16391722
Alignment:
| Q |
197 |
gcttccccaatggcacgagctccatcaatccgaa |
230 |
Q |
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| T |
16391689 |
gcttcctcaatggcacgagctccatcaatccgaa |
16391722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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