View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_152 (Length: 293)

Name: NF0412_low_152
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_152
NF0412_low_152
[»] chr8 (3 HSPs)
chr8 (138-272)||(40277888-40278029)
chr8 (3-124)||(24917437-24917557)
chr8 (3-73)||(1080913-1080983)
[»] chr4 (1 HSPs)
chr4 (5-137)||(38620669-38620799)
[»] chr1 (1 HSPs)
chr1 (5-89)||(46903332-46903416)
[»] chr7 (3 HSPs)
chr7 (3-103)||(7744518-7744618)
chr7 (102-137)||(33132509-33132544)
chr7 (3-73)||(12543325-12543395)
[»] chr6 (1 HSPs)
chr6 (3-73)||(15339473-15339543)
[»] chr2 (2 HSPs)
chr2 (102-135)||(406781-406814)
chr2 (60-139)||(34332328-34332407)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 138 - 272
Target Start/End: Complemental strand, 40278029 - 40277888
Alignment:
Q  138 atgctttaataatg-cccttttgcagtgtcacgtagctccaaaacagtgaccctaaactagggatctacatgttctcagg------ctgtttttccattt 230  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||    
T  40278029 atgctttaataatggcccttttgcagtgtcacgtagctccaaaacagtgaccctaaactagggatctacatgttctcaggcattgactgtttttccattt 40277930  T
Q  231 accatatgttgggacaattctataattgttttttatgatgat 272  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  40277929 cccatatgttgggacaattctataattgttttttatgatgat 40277888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 24917557 - 24917437
Alignment:
Q  3 aggagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatagtcttgccacttggggggtgtacattggg 102  Q
    |||||||||||||  | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||  | |||||| |  |||||||| | ||||    
T  24917557 aggagaagaaaggtagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataaggggtgtata-tggg 24917459  T
Q  103 ggtatacatggaagtgtgtcta 124  Q
    | | |||||| |||||||||||    
T  24917458 gatgtacatgaaagtgtgtcta 24917437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 1080983 - 1080913
Alignment:
Q  3 aggagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaata 73  Q
    |||||||||||||  | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||    
T  1080983 aggagaagaaaggtagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaata 1080913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 38620799 - 38620669
Alignment:
Q  5 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatagtcttgccacttggggggtgtacattggggg 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||||||| ||||    
T  38620799 gagaagaaagggtggtctacgagagagaagagggtgaaaacaataaagctctgtgaaattaccaaaatagccttgccacat-gagggtgtacatt-gggg 38620702  T
Q  105 tatacatggaagtgtgtctatgtatctttttcc 137  Q
    | |||||||||||||||||||||||||||||||    
T  38620701 tgtacatggaagtgtgtctatgtatctttttcc 38620669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 46903332 - 46903416
Alignment:
Q  5 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatagtcttgccacttgggg 89  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  46903332 gagaagaaagggtggtctacgatagagaagaggttgaaaacaataaagttgtgtgaaattaccaaaatagccttgccacatgggg 46903416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 7744618 - 7744518
Alignment:
Q  3 aggagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatagtcttgccacttggggggtgtacattggg 102  Q
    |||||||||||||| | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||  | |||||| |  |||||||| ||||||    
T  7744618 aggagaagaaagggagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataaggggtgtatattggg 7744519  T
Q  103 g 103  Q
    |    
T  7744518 g 7744518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 33132544 - 33132509
Alignment:
Q  102 gggtatacatggaagtgtgtctatgtatctttttcc 137  Q
    |||| |||||||||||||||||||||||||||||||    
T  33132544 gggtgtacatggaagtgtgtctatgtatctttttcc 33132509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 12543325 - 12543395
Alignment:
Q  3 aggagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaata 73  Q
    |||||||||||||| | ||||  |||||||||||||||| ||  | |||||||| ||||||| ||||||||    
T  12543325 aggagaagaaagggagatctaagagagagaagagggtgagaaagagaaagctgtttgaaatttccaaaata 12543395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 15339543 - 15339473
Alignment:
Q  3 aggagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaata 73  Q
    |||||||||||||  | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||    
T  15339543 aggagaagaaaggtagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaata 15339473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 406781 - 406814
Alignment:
Q  102 gggtatacatggaagtgtgtctatgtatcttttt 135  Q
    |||| |||||||||||||||||||||||||||||    
T  406781 gggtgtacatggaagtgtgtctatgtatcttttt 406814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 34332328 - 34332407
Alignment:
Q  60 aaattaccaaaatagtcttgccacttggggggtgtacattgggggtatacatggaa-gtgtgtctatgtatctttttccat 139  Q
    ||||||| ||||||| | |||||| ||| ||||||||||| ||||| ||||||||| | ||||  ||||||||||||||||    
T  34332328 aaattacaaaaatagccatgccacatggagggtgtacatt-ggggtgtacatggaatgggtgtacatgtatctttttccat 34332407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 552 times since January 2019
Visitors: 3061