View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_153 (Length: 291)
Name: NF0412_low_153
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_153 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 27065667 - 27065832
Alignment:
| Q |
79 |
actgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactc |
178 |
Q |
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| T |
27065667 |
actgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactc |
27065766 |
T |
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| Q |
179 |
aacgcatccaccatcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctca |
244 |
Q |
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| T |
27065767 |
aacgcatccaccatcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctca |
27065832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 27079391 - 27079549
Alignment:
| Q |
86 |
cccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcat |
185 |
Q |
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| T |
27079391 |
cccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatactcggtgccctctcacactcacccaatgagt |
27079490 |
T |
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| Q |
186 |
ccaccatcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctca |
244 |
Q |
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| T |
27079491 |
ccactatcatcttatccatcgaggaattctcagacaccttaaaaacttgcttcaactca |
27079549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 27053231 - 27053386
Alignment:
| Q |
85 |
acccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgca |
184 |
Q |
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| T |
27053231 |
acccaaaatagaagttgcaaagtcaatcatgtcctcaagcgaacctacacaacgcttgatctcacctttacttggcgctctttcacactcactcaatgag |
27053330 |
T |
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| Q |
185 |
tccaccatcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcat |
240 |
Q |
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| T |
27053331 |
tccactatcatcttttccataaaggaattttcagacaccttgaaaacttgcttcat |
27053386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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