View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_155 (Length: 291)
Name: NF0412_low_155
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_155 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31063712 - 31063519
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
31063712 |
aatggtaccataaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccgctagttgctttggtgctgatgtat |
31063613 |
T |
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| Q |
101 |
tatctgctattgatcaagcaattgatgatggtgttgatataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttac |
194 |
Q |
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| T |
31063612 |
tatctgctattgatcaagcaattgatgatggtgttgacataatatctgtttctgctggaggcccatctagtacaaattctgaagaaatttttac |
31063519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 31108799 - 31108603
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
31108799 |
aatggtaccataaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccactagttgctttggtgctgatgtat |
31108700 |
T |
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| Q |
101 |
tatctgctattgatcaagcaattgatgatggtgttgatataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactga |
197 |
Q |
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| T |
31108699 |
tatctgctattgatcaagcaattgatgatggtgttgacataatatctgtttctgctggaggcccatctagtacaaattctgaagaaatttttactga |
31108603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 31146546 - 31146350
Alignment:
| Q |
4 |
ggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagt-tgctttggtgctgacgtatta |
102 |
Q |
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|||||||||||||| |||||||||||| | || |||||||||||||||| |||||||||||||| |||| || ||| ||||||||||| || |||||| |
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| T |
31146546 |
ggtaccataaaaggtggttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttg-tagactgctttggtgccgatgtatta |
31146448 |
T |
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| Q |
103 |
tctgctattgatcaagcaattgatgatggtgttgatataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatga |
200 |
Q |
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| T |
31146447 |
gctgctattgatcaagcaatttacgacggtgctgatttgatttctgtttcggctggaggcaaacctaatacaaatcctgaagttatttttactgatga |
31146350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 31164372 - 31164176
Alignment:
| Q |
4 |
ggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagt-tgctttggtgctgacgtatta |
102 |
Q |
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|||||||||||||| |||||||||||| | || |||||||||||||||| |||||||||||||| |||| || ||| ||||| ||||| || |||||| |
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| T |
31164372 |
ggtaccataaaaggtggttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttg-tagactgcttcggtgccgatgtatta |
31164274 |
T |
|
| Q |
103 |
tctgctattgatcaagcaattgatgatggtgttgatataatttctgtttctgctgggggccaatctagtacaaattctgaacaaatttttactgatga |
200 |
Q |
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|||||||||||||||||||| | || |||| |||| | ||||||||||| ||||| ||| || ||| ||||||| ||||| |||||||||||||| |
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| T |
31164273 |
gctgctattgatcaagcaatttacgacggtgctgatttgatttctgtttcggctggaggcaaacctaatacaaatcctgaagttatttttactgatga |
31164176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 31051161 - 31051048
Alignment:
| Q |
87 |
tggtgctgacgtattatctgctattgatcaagcaattgatgatggtgttgatataatttctgtttctgctgggggccaatctagtacaaattctgaacaa |
186 |
Q |
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||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||| || ||||||| ||| |||| ||||||| |||||| |||| || |
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| T |
31051161 |
tggtgctgatgtattatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttctgttggaggccgatctagttcaaattttgaagaa |
31051062 |
T |
|
| Q |
187 |
atttttactgatga |
200 |
Q |
| |
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|||||||| ||||| |
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| T |
31051061 |
atttttaccgatga |
31051048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 31201456 - 31201598
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtat |
100 |
Q |
| |
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|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||| || ||||||||||| || |||| |
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| T |
31201456 |
aatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgaagactgctttggtgccgatgtat |
31201555 |
T |
|
| Q |
101 |
tatctgctattgatcaagcaattgatgatggtgttgatataat |
143 |
Q |
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|| |||||||||||||||| ||| |||||||||||||||||| |
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| T |
31201556 |
tagctgctattgatcaagccattagtgatggtgttgatataat |
31201598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 31051259 - 31051192
Alignment:
| Q |
1 |
aatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaac |
68 |
Q |
| |
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||||||||||| ||||| |||||||||| | | || |||| ||||||||||||||||||||||| ||| |
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| T |
31051259 |
aatggtaccattaaaggtggttcaccaaaatcaagagttgtaacctacaaagtgtgttggtctcaaac |
31051192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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