View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_156 (Length: 290)
Name: NF0412_low_156
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_156 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 38423098 - 38422923
Alignment:
| Q |
66 |
caaaggaaaaaacgaaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatca |
165 |
Q |
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| T |
38423098 |
caaaggaaaaaacgtaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatca |
38422999 |
T |
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| Q |
166 |
tcattcaagtggaacagacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgactttg |
241 |
Q |
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| T |
38422998 |
tcattcaagtggaacacacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgcctttg |
38422923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 38413207 - 38413036
Alignment:
| Q |
73 |
aaaaacgaaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatc---at |
169 |
Q |
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||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||| || |
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| T |
38413207 |
aaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatcttcatcaggat |
38413108 |
T |
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| Q |
170 |
tcaagtggaacagacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgactttg |
241 |
Q |
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| T |
38413107 |
tcaggtggaacagacttacttcgccggtttcattcatggaagatattgtttttaaggttgtctctgcctttg |
38413036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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