View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_157 (Length: 290)

Name: NF0412_low_157
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_157
NF0412_low_157
[»] chr7 (5 HSPs)
chr7 (136-220)||(775403-775487)
chr7 (237-275)||(45987539-45987577)
chr7 (228-275)||(14053991-14054038)
chr7 (228-275)||(14364019-14364066)
chr7 (237-275)||(25923561-25923599)
[»] chr6 (5 HSPs)
chr6 (228-275)||(504143-504190)
chr6 (228-271)||(5086655-5086698)
chr6 (228-271)||(15644242-15644285)
chr6 (228-275)||(19226995-19227042)
chr6 (239-275)||(8263738-8263774)
[»] chr4 (8 HSPs)
chr4 (237-275)||(8934592-8934630)
chr4 (237-275)||(19644481-19644519)
chr4 (228-275)||(23118917-23118964)
chr4 (240-275)||(48031769-48031804)
chr4 (237-270)||(30309922-30309955)
chr4 (239-275)||(7472900-7472936)
chr4 (239-275)||(23657165-23657201)
chr4 (239-271)||(33988384-33988416)
[»] scaffold0108 (1 HSPs)
scaffold0108 (228-271)||(10390-10433)
[»] chr1 (2 HSPs)
chr1 (228-271)||(7178351-7178394)
chr1 (239-271)||(25505609-25505641)
[»] chr8 (1 HSPs)
chr8 (237-275)||(36319102-36319140)
[»] chr5 (1 HSPs)
chr5 (237-274)||(5415721-5415758)
[»] chr3 (1 HSPs)
chr3 (239-280)||(20894377-20894418)
[»] chr2 (2 HSPs)
chr2 (239-275)||(10978617-10978653)
chr2 (239-271)||(15017151-15017183)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 775403 - 775487
Alignment:
Q  136 aaaaaggtagttgtctaaattttttaagagcttgtgaaatatttgtttattttgagaagcttggaaatagcatatgacagtctat 220  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  775403 aaaaaggtatttgtctgaattttttaagagcttgtgaaatatttgtttattttgagaagcttggaaatagcatatgacagtctat 775487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 45987539 - 45987577
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  45987539 tcaaaaatggaattatattaacaacaagagtctcaatag 45987577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 14053991 - 14054038
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||  |||||||||||||||||||||||| || |||||||||||    
T  14053991 tttgaacaatcaaaaatggaattatattaacaataagagtctcaatag 14054038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 14364019 - 14364066
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||  |||||||||||||||||||||||| || |||||||||||    
T  14364019 tttgaacaatcaaaaatggaattatattaacaataagagtctcaatag 14364066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 25923561 - 25923599
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  25923561 tcaaaaatgggattatattaacaacaagagtctcaatag 25923599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 504190 - 504143
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||    
T  504190 tttgaacaatcaaaaatggaattatattaacaacaagagtctcaatag 504143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 5086698 - 5086655
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 271  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  5086698 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 5086655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 15644285 - 15644242
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 271  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  15644285 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 15644242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 19226995 - 19227042
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||  ||||||||||||||| ||||||||||| |||||||||||    
T  19226995 tttgaacaatcaaaaatggaattaaattaacaacaagagtctcaatag 19227042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 8263738 - 8263774
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||| |||||||||||||||| |||||||||||    
T  8263738 aaaaatgggattatattaacaacaagagtctcaatag 8263774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 8934592 - 8934630
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  8934592 tcaaaaatggaattatattaacaacaatagtctcaatag 8934630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 19644481 - 19644519
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  19644481 tcaaaaatggaattatattaacaacaagagtctcaatag 19644519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 23118917 - 23118964
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||  |||||||||| |||||||||||||||| |||||||||||    
T  23118917 tttgaacaatcaaaaatgggattatattaacaacaagagtctcaatag 23118964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 48031804 - 48031769
Alignment:
Q  240 aaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||||||||||||||||||| |||||||||||    
T  48031804 aaaatggaattatattaacaacaagagtctcaatag 48031769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 30309922 - 30309955
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctc 270  Q
    ||||||||||||||||||||||||||| ||||||    
T  30309922 tcaaaaatggaattatattaacaacaagagtctc 30309955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 7472900 - 7472936
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  7472900 aaaaatggaattatattaataacaagagtctcaatag 7472936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 23657165 - 23657201
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||| |||||||||||||||| |||||||||||    
T  23657165 aaaaatgggattatattaacaacaagagtctcaatag 23657201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 33988416 - 33988384
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctca 271  Q
    ||||||||||||||||||||||||| |||||||    
T  33988416 aaaaatggaattatattaacaacaagagtctca 33988384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 10390 - 10433
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 271  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  10390 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 10433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 7178351 - 7178394
Alignment:
Q  228 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 271  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  7178351 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 7178394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 25505641 - 25505609
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctca 271  Q
    ||||||||||||||||||||||||| |||||||    
T  25505641 aaaaatggaattatattaacaacaagagtctca 25505609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 36319140 - 36319102
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  36319140 tcaaaaatgggattatattaacaacaagagtctcaatag 36319102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 5415758 - 5415721
Alignment:
Q  237 tcaaaaatggaattatattaacaacaaaagtctcaata 274  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  5415758 tcaaaaatggaattatattaacaacaagattctcaata 5415721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 20894418 - 20894377
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctcaatagtataa 280  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  20894418 aaaaatggaattatattaacaacaagagtctcattagcataa 20894377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 10978653 - 10978617
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctcaatag 275  Q
    |||||||| |||||||||||||||| |||||||||||    
T  10978653 aaaaatgggattatattaacaacaagagtctcaatag 10978617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 15017151 - 15017183
Alignment:
Q  239 aaaaatggaattatattaacaacaaaagtctca 271  Q
    ||||||||||||||||||||||||| |||||||    
T  15017151 aaaaatggaattatattaacaacaagagtctca 15017183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1259 times since January 2019
Visitors: 3079