View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_16 (Length: 467)

Name: NF0412_low_16
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_16
NF0412_low_16
[»] chr5 (3 HSPs)
chr5 (51-457)||(28136246-28136655)
chr5 (393-439)||(12478324-12478370)
chr5 (380-413)||(22817195-22817228)
[»] chr4 (1 HSPs)
chr4 (381-439)||(39439259-39439317)
[»] chr1 (2 HSPs)
chr1 (381-428)||(44363999-44364046)
chr1 (393-423)||(4785044-4785074)
[»] chr8 (3 HSPs)
chr8 (381-435)||(31586217-31586271)
chr8 (381-422)||(5041196-5041237)
chr8 (394-434)||(27219851-27219891)
[»] chr3 (3 HSPs)
chr3 (386-428)||(13635634-13635676)
chr3 (394-440)||(21110706-21110752)
chr3 (381-409)||(14774140-14774168)
[»] chr6 (1 HSPs)
chr6 (394-439)||(414669-414714)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 51 - 457
Target Start/End: Complemental strand, 28136655 - 28136246
Alignment:
Q  51 gtggtgtccgtgtttgagtatgtgctttatagtatggtatgctatcatcattttaagtgtgaacnnnnnnnnnnn---gcgacacgaatcatcagtggga 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  28136655 gtggtgtccgtgtttgagtatgtgctttatagtatggtatgctatcatcattttaagtgtgaacaaaaaaaaaaaaaagcgacacgaatcatcagtggga 28136556  T
Q  148 tgtgattcgacaacaaattttgaaagtggcaaatttggacactaactccctataattacactaactccaattagtttaactttcagtttctgtcaaatca 247  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  28136555 tgtaattcgacaacaaattttgaaagtggaaaatttggacactaactccctataaggacgctaactccaattagtttaactttcagtttctgtcaaatca 28136456  T
Q  248 tattgcaatagtggacaagtttacttgacagcgaaaaaagaatgattttccaaatgttaaatatgtgcataattgtacttagatggtttgcattttatag 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136455 tattgcaatagtggacaagtttacttgacagcgaaaaaagaatgattttccaaatgttaaatatgtgcataattgtacttagatggtttgcattttatag 28136356  T
Q  348 gctactgctattaataaaaacgtaactgacaagctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtccgtgtcg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136355 gctactgctattaataaaaacgtaactgacaagctctatagcactgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtccgtgtcg 28136256  T
Q  448 tgtttctctg 457  Q
    ||||||||||    
T  28136255 tgtttctctg 28136246  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 12478370 - 12478324
Alignment:
Q  393 gacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 439  Q
    |||| ||||||| |||| ||||||||||||||||||||||| |||||    
T  12478370 gacatttctgatggaaggcgtgtctggtgtctgacatgtgtaagtgt 12478324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 413
Target Start/End: Complemental strand, 22817228 - 22817195
Alignment:
Q  380 gctctatagcattgacacttctgatcgaagacgt 413  Q
    ||||||||||| ||||||||||||||||||||||    
T  22817228 gctctatagcactgacacttctgatcgaagacgt 22817195  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 39439317 - 39439259
Alignment:
Q  381 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 439  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||| ||||| ||||    
T  39439317 ctctatagcacttacacttctgatcgaagacgtctctggtgtctgacacgtgtctgtgt 39439259  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Complemental strand, 44364046 - 44363999
Alignment:
Q  381 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgaca 428  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  44364046 ctctatagcattgacacttctaatcaaagccgtgtctggtgtccgaca 44363999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 423
Target Start/End: Complemental strand, 4785074 - 4785044
Alignment:
Q  393 gacacttctgatcgaagacgtgtctggtgtc 423  Q
    |||||||||||||||||||||||||||||||    
T  4785074 gacacttctgatcgaagacgtgtctggtgtc 4785044  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 31586217 - 31586271
Alignment:
Q  381 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtca 435  Q
    |||||||||| |||||||||||||| ||| | |||||||||||  ||||||||||    
T  31586217 ctctatagcactgacacttctgatcaaagccatgtctggtgtccaacatgtgtca 31586271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 5041196 - 5041237
Alignment:
Q  381 ctctatagcattgacacttctgatcgaagacgtgtctggtgt 422  Q
    |||| ||||| |||||||| ||||||||||||||||||||||    
T  5041196 ctctgtagcactgacacttttgatcgaagacgtgtctggtgt 5041237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 27219891 - 27219851
Alignment:
Q  394 acacttctgatcgaagacgtgtctggtgtctgacatgtgtc 434  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  27219891 acacttctgatcgaaggtgtgtctggtgtctaacatgtgtc 27219851  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 13635676 - 13635634
Alignment:
Q  386 tagcattgacacttctgatcgaagacgtgtctggtgtctgaca 428  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||    
T  13635676 tagcactgacacttctgatagaaggcgtgtctggtgtctgaca 13635634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 21110706 - 21110752
Alignment:
Q  394 acacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtc 440  Q
    |||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  21110706 acacttctgatcgaaagcgtgtttggtgtctgacatgtgtcaatgtc 21110752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 409
Target Start/End: Complemental strand, 14774168 - 14774140
Alignment:
Q  381 ctctatagcattgacacttctgatcgaag 409  Q
    |||||||||||||||||||||||||||||    
T  14774168 ctctatagcattgacacttctgatcgaag 14774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 414669 - 414714
Alignment:
Q  394 acacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 439  Q
    |||| |||||||||||  |||||||||||||||||||||| |||||    
T  414669 acacctctgatcgaagttgtgtctggtgtctgacatgtgttagtgt 414714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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