View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_165 (Length: 288)

Name: NF0412_low_165
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_165
NF0412_low_165
[»] chr7 (5 HSPs)
chr7 (134-218)||(775403-775487)
chr7 (235-273)||(45987539-45987577)
chr7 (226-273)||(14053991-14054038)
chr7 (226-273)||(14364019-14364066)
chr7 (235-273)||(25923561-25923599)
[»] chr6 (5 HSPs)
chr6 (226-273)||(504143-504190)
chr6 (226-269)||(5086655-5086698)
chr6 (226-269)||(15644242-15644285)
chr6 (226-273)||(19226995-19227042)
chr6 (237-273)||(8263738-8263774)
[»] chr4 (8 HSPs)
chr4 (235-273)||(8934592-8934630)
chr4 (235-273)||(19644481-19644519)
chr4 (226-273)||(23118917-23118964)
chr4 (238-273)||(48031769-48031804)
chr4 (235-268)||(30309922-30309955)
chr4 (237-273)||(7472900-7472936)
chr4 (237-273)||(23657165-23657201)
chr4 (237-269)||(33988384-33988416)
[»] scaffold0108 (1 HSPs)
scaffold0108 (226-269)||(10390-10433)
[»] chr1 (2 HSPs)
chr1 (226-269)||(7178351-7178394)
chr1 (237-269)||(25505609-25505641)
[»] chr8 (1 HSPs)
chr8 (235-273)||(36319102-36319140)
[»] chr5 (1 HSPs)
chr5 (235-272)||(5415721-5415758)
[»] chr3 (1 HSPs)
chr3 (237-278)||(20894377-20894418)
[»] chr2 (2 HSPs)
chr2 (237-273)||(10978617-10978653)
chr2 (237-269)||(15017151-15017183)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 775403 - 775487
Alignment:
Q  134 aaaaaggtagttgtctaaattttttaagagcttgtgaaatatttgtttattttgagaagcttggaaatagcatatgacagtctat 218  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  775403 aaaaaggtatttgtctgaattttttaagagcttgtgaaatatttgtttattttgagaagcttggaaatagcatatgacagtctat 775487  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 45987539 - 45987577
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  45987539 tcaaaaatggaattatattaacaacaagagtctcaatag 45987577  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 14053991 - 14054038
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||  |||||||||||||||||||||||| || |||||||||||    
T  14053991 tttgaacaatcaaaaatggaattatattaacaataagagtctcaatag 14054038  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 14364019 - 14364066
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||  |||||||||||||||||||||||| || |||||||||||    
T  14364019 tttgaacaatcaaaaatggaattatattaacaataagagtctcaatag 14364066  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 25923561 - 25923599
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  25923561 tcaaaaatgggattatattaacaacaagagtctcaatag 25923599  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 504190 - 504143
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||    
T  504190 tttgaacaatcaaaaatggaattatattaacaacaagagtctcaatag 504143  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 5086698 - 5086655
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 269  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  5086698 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 5086655  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 15644285 - 15644242
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 269  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  15644285 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 15644242  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 19226995 - 19227042
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||  ||||||||||||||| ||||||||||| |||||||||||    
T  19226995 tttgaacaatcaaaaatggaattaaattaacaacaagagtctcaatag 19227042  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 8263738 - 8263774
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||| |||||||||||||||| |||||||||||    
T  8263738 aaaaatgggattatattaacaacaagagtctcaatag 8263774  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 8934592 - 8934630
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  8934592 tcaaaaatggaattatattaacaacaatagtctcaatag 8934630  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 19644481 - 19644519
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  19644481 tcaaaaatggaattatattaacaacaagagtctcaatag 19644519  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 23118917 - 23118964
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||  |||||||||| |||||||||||||||| |||||||||||    
T  23118917 tttgaacaatcaaaaatgggattatattaacaacaagagtctcaatag 23118964  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 48031804 - 48031769
Alignment:
Q  238 aaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||||||||||||||||||| |||||||||||    
T  48031804 aaaatggaattatattaacaacaagagtctcaatag 48031769  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 30309922 - 30309955
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctc 268  Q
    ||||||||||||||||||||||||||| ||||||    
T  30309922 tcaaaaatggaattatattaacaacaagagtctc 30309955  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 7472900 - 7472936
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  7472900 aaaaatggaattatattaataacaagagtctcaatag 7472936  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 23657165 - 23657201
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||| |||||||||||||||| |||||||||||    
T  23657165 aaaaatgggattatattaacaacaagagtctcaatag 23657201  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 33988416 - 33988384
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctca 269  Q
    ||||||||||||||||||||||||| |||||||    
T  33988416 aaaaatggaattatattaacaacaagagtctca 33988384  T

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Target: scaffold0108 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 10390 - 10433
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 269  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  10390 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 10433  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 7178351 - 7178394
Alignment:
Q  226 tttgaacggtcaaaaatggaattatattaacaacaaaagtctca 269  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  7178351 tttgaacaatcaaaaatggaattatattaacaacaagagtctca 7178394  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 25505641 - 25505609
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctca 269  Q
    ||||||||||||||||||||||||| |||||||    
T  25505641 aaaaatggaattatattaacaacaagagtctca 25505609  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 36319140 - 36319102
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  36319140 tcaaaaatgggattatattaacaacaagagtctcaatag 36319102  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 5415758 - 5415721
Alignment:
Q  235 tcaaaaatggaattatattaacaacaaaagtctcaata 272  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  5415758 tcaaaaatggaattatattaacaacaagattctcaata 5415721  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 20894418 - 20894377
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctcaatagtataa 278  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  20894418 aaaaatggaattatattaacaacaagagtctcattagcataa 20894377  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 10978653 - 10978617
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctcaatag 273  Q
    |||||||| |||||||||||||||| |||||||||||    
T  10978653 aaaaatgggattatattaacaacaagagtctcaatag 10978617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 15017151 - 15017183
Alignment:
Q  237 aaaaatggaattatattaacaacaaaagtctca 269  Q
    ||||||||||||||||||||||||| |||||||    
T  15017151 aaaaatggaattatattaacaacaagagtctca 15017183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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