View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_167 (Length: 287)

Name: NF0412_low_167
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_167
NF0412_low_167
[»] chr1 (4 HSPs)
chr1 (89-233)||(383881-384025)
chr1 (89-232)||(19040194-19040337)
chr1 (45-109)||(384039-384103)
chr1 (45-84)||(19040117-19040156)
[»] chr4 (9 HSPs)
chr4 (89-232)||(22206685-22206827)
chr4 (89-208)||(23142110-23142229)
chr4 (45-109)||(22206841-22206905)
chr4 (91-154)||(15738161-15738224)
chr4 (71-162)||(26629013-26629103)
chr4 (45-84)||(15738264-15738303)
chr4 (45-87)||(23141966-23142008)
chr4 (45-85)||(8652009-8652049)
chr4 (45-85)||(8663816-8663856)
[»] chr5 (1 HSPs)
chr5 (89-232)||(1997860-1998003)
[»] chr3 (1 HSPs)
chr3 (91-232)||(33815747-33815888)
[»] chr8 (4 HSPs)
chr8 (45-109)||(44073807-44073871)
chr8 (89-232)||(44073885-44074028)
chr8 (71-164)||(36838271-36838363)
chr8 (101-162)||(36837856-36837917)
[»] chr7 (1 HSPs)
chr7 (89-232)||(4658556-4658699)
[»] chr2 (1 HSPs)
chr2 (71-162)||(28504537-28504627)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 384025 - 383881
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||||  |    
T  384025 tgttttcaattgccatcatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttgaatcaacagttgtgattaagtgtgtggttgaga 383926  T
Q  189 gattagattaacaacaattacatgcttaagaggggaaaatgcaac 233  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  383925 gattagattagcaacaattacatgcttaggagggaaaaatgcaac 383881  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 19040194 - 19040337
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||||||||||| ||||||||||||| |||||||||||||||  |||||||||| ||||| ||||| ||||||| | ||| | ||||||| ||||||| |    
T  19040194 tgttttcaattgtcattatgacgtttttgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggctgtgattaagtgtctggttggga 19040293  T
Q  189 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 232  Q
    |||||||||| ||| |||||| |||||| ||| | |||||||||    
T  19040294 gattagattagcaataattacctgcttatgagagaaaaatgcaa 19040337  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 384103 - 384039
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaatacgtgttttcaattgccattatga 109  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  384103 tgagatgaagggagtggttgactgagttgattatcattaatatgtgttttcaattgccattatga 384039  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 19040117 - 19040156
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaa 84  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  19040117 tgagatgaagagagtggttgactgacttgattagcattaa 19040156  T

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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 22206827 - 22206685
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||| |||| |    
T  22206827 tgttttcaattgccattatgacatttctgtatgagagagaaagcgaggagtttgaaaataaagtttgaatcaacggttgtgattaagtgtgtgattggga 22206728  T
Q  189 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 232  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  22206727 gattagattagcaataattacatgcttaaga-gggaaaatgcaa 22206685  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 23142110 - 23142229
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||||| ||||| ||||||| ||||| | ||||||||||||||| |    
T  23142110 tgttttcaattgccattatgccgtttctgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggttgtgattaagtgtgtggttggga 23142209  T
Q  189 gattagattaacaacaatta 208  Q
     ||||||||| ||| |||||    
T  23142210 tattagattagcaataatta 23142229  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 22206905 - 22206841
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaatacgtgttttcaattgccattatga 109  Q
    |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  22206905 tgagatgaagggagcggttgactgagttgattaacattaatatgtgttttcaattgccattatga 22206841  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 15738224 - 15738161
Alignment:
Q  91 ttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagttt 154  Q
    |||| ||||| |||||||||||||||||||||||||||||  |||||||||| ||||| |||||    
T  15738224 tttttaattgtcattatgacgtttctgtatgagagagaaaatgaggagtttgaaaatagagttt 15738161  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 26629013 - 26629103
Alignment:
Q  71 ttgattagcattaa-tacgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaac 162  Q
    |||||||||||||| |||||  ||||||| ||||||||||||| |||||||||||||| ||   || |||||| ||||| ||||| |||||||    
T  26629013 ttgattagcattaactacgt--tttcaatggccattatgacgtatctgtatgagagaggaaataagtagtttgaaaatagagtttgaatcaac 26629103  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 15738303 - 15738264
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaa 84  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  15738303 tgagatgaagggagtggttgactaacttgattagcattaa 15738264  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 23141966 - 23142008
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaatac 87  Q
    ||||||| |||| |||||||||||||||||||| |||||||||    
T  23141966 tgagatgtagggggtggttgactgagttgattaacattaatac 23142008  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 8652009 - 8652049
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaat 85  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  8652009 tgagatgtaaggagtggttgactgagttgattaacattaat 8652049  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 8663816 - 8663856
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaat 85  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  8663816 tgagatgtaaggagtggttgactgagttgattaacattaat 8663856  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 1997860 - 1998003
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||| ||||| ||||||| ||||| | |||||||||||||   |    
T  1997860 tgttttcaattgccattatgacgtttttgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggttgtgattaagtgtgtggttatga 1997959  T
Q  189 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 232  Q
    |||||||||| ||| |||||| |||||| | ||| |||||||||    
T  1997960 gattagattagcaataattacctgcttaggtgggaaaaatgcaa 1998003  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 33815747 - 33815888
Alignment:
Q  91 ttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggtaga 190  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||| ||||| ||||||| | ||| | ||||||||||||||  |||    
T  33815747 ttttcaattgccattatgacatttctgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggctgtgattaagtgtgtggttgagaga 33815846  T
Q  191 ttagattaacaacaattacatgcttaagaggggaaaatgcaa 232  Q
    |||||||| ||| |||||| | |||| ||||| |||||||||    
T  33815847 ttagattagcaataattacctacttaggagggaaaaatgcaa 33815888  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 44073807 - 44073871
Alignment:
Q  45 tgagatgaagggagtggttgactgagttgattagcattaatacgtgttttcaattgccattatga 109  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44073807 tgagatgaagggagtggttgactgagttgattaacattaatacgtgttttcaattgccattatga 44073871  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 44073885 - 44074028
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||||||||||||||||||||| ||||||||||||||| |||| || ||||||| ||||| ||||| |||||||   ||| | ||||||||||||||| |    
T  44073885 tgttttcaattgccattatgacatttctgtatgagagaaaaagtgatgagtttgaaaatagagtttgaatcaacgactgtgattaagtgtgtggttggga 44073984  T
Q  189 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 232  Q
    || || ||||  || |||| |||||||| ||||| |||||||||    
T  44073985 gaataaattagtaataattgcatgcttaggagggaaaaatgcaa 44074028  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 36838271 - 36838363
Alignment:
Q  71 ttgattagcattaat-acgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacag 164  Q
    ||||||||||||||| ||||  |||||||  |||||||||||| |||||||||||||| ||  ||| |||||| ||||||||||| |||||||||    
T  36838271 ttgattagcattaattacgt--tttcaatgaccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaataaagtttgaatcaacag 36838363  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 36837856 - 36837917
Alignment:
Q  101 ccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaac 162  Q
    |||||||||||| |||||||||||||| ||  ||| |||||| ||||| ||||| |||||||    
T  36837856 ccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaatagagtttgaatcaac 36837917  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 4658556 - 4658699
Alignment:
Q  89 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 188  Q
    |||| ||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| ||||||| | | | | ||||||| ||||||  |    
T  4658556 tgttatcaattgtcattatgaagtttctgtatgagagagaaagtgaggagtttgaaaatagagtttgaatcaacggctttgattaagtgtatggttgtga 4658655  T
Q  189 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 232  Q
    |||||||||| |   ||||||||||||| ||| | |||||||||    
T  4658656 gattagattagctctaattacatgcttaggagagaaaaatgcaa 4658699  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 28504537 - 28504627
Alignment:
Q  71 ttgattagcattaa-tacgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgcaaataaagtttaaatcaac 162  Q
    |||||||||||||| |||||  |||||||  |||||||||||| |||||||||||||| ||  ||| |||||| ||||| | ||| |||||||    
T  28504537 ttgattagcattaactacgt--tttcaatgaccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaatagaatttgaatcaac 28504627  T

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