View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_17 (Length: 465)

Name: NF0412_low_17
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_17
NF0412_low_17
[»] chr5 (3 HSPs)
chr5 (51-455)||(28136246-28136655)
chr5 (391-437)||(12478324-12478370)
chr5 (378-411)||(22817195-22817228)
[»] chr4 (1 HSPs)
chr4 (379-437)||(39439259-39439317)
[»] chr1 (2 HSPs)
chr1 (379-426)||(44363999-44364046)
chr1 (391-421)||(4785044-4785074)
[»] chr8 (3 HSPs)
chr8 (379-433)||(31586217-31586271)
chr8 (379-420)||(5041196-5041237)
chr8 (392-432)||(27219851-27219891)
[»] chr3 (3 HSPs)
chr3 (384-426)||(13635634-13635676)
chr3 (392-438)||(21110706-21110752)
chr3 (379-407)||(14774140-14774168)
[»] chr6 (1 HSPs)
chr6 (392-437)||(414669-414714)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 51 - 455
Target Start/End: Complemental strand, 28136655 - 28136246
Alignment:
Q  51 gtggtgtccgtgtttgagtatgtgctttatagtatggtatgctatcatcattttaagtgtgaacnnnnnnnnn-----gcgacacgaatcatcagtggga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  28136655 gtggtgtccgtgtttgagtatgtgctttatagtatggtatgctatcatcattttaagtgtgaacaaaaaaaaaaaaaagcgacacgaatcatcagtggga 28136556  T
Q  146 tgtgattcgacaacaaattttgaaagtggcaaatttggacactaactccctataattacactaactccaattagtttaactttcagtttctgtcaaatca 245  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  28136555 tgtaattcgacaacaaattttgaaagtggaaaatttggacactaactccctataaggacgctaactccaattagtttaactttcagtttctgtcaaatca 28136456  T
Q  246 tattgcaatagtggacaagtttacttgacagcgaaaaaagaatgattttccaaatgttaaatatgtgcataattgtacttagatggtttgcattttatag 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136455 tattgcaatagtggacaagtttacttgacagcgaaaaaagaatgattttccaaatgttaaatatgtgcataattgtacttagatggtttgcattttatag 28136356  T
Q  346 gctactgctattaataaaaacgtaactgacaagctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtccgtgtcg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136355 gctactgctattaataaaaacgtaactgacaagctctatagcactgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtccgtgtcg 28136256  T
Q  446 tgtttctctg 455  Q
    ||||||||||    
T  28136255 tgtttctctg 28136246  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 12478370 - 12478324
Alignment:
Q  391 gacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 437  Q
    |||| ||||||| |||| ||||||||||||||||||||||| |||||    
T  12478370 gacatttctgatggaaggcgtgtctggtgtctgacatgtgtaagtgt 12478324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 22817228 - 22817195
Alignment:
Q  378 gctctatagcattgacacttctgatcgaagacgt 411  Q
    ||||||||||| ||||||||||||||||||||||    
T  22817228 gctctatagcactgacacttctgatcgaagacgt 22817195  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 39439317 - 39439259
Alignment:
Q  379 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 437  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||| ||||| ||||    
T  39439317 ctctatagcacttacacttctgatcgaagacgtctctggtgtctgacacgtgtctgtgt 39439259  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Complemental strand, 44364046 - 44363999
Alignment:
Q  379 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgaca 426  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  44364046 ctctatagcattgacacttctaatcaaagccgtgtctggtgtccgaca 44363999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 421
Target Start/End: Complemental strand, 4785074 - 4785044
Alignment:
Q  391 gacacttctgatcgaagacgtgtctggtgtc 421  Q
    |||||||||||||||||||||||||||||||    
T  4785074 gacacttctgatcgaagacgtgtctggtgtc 4785044  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 31586217 - 31586271
Alignment:
Q  379 ctctatagcattgacacttctgatcgaagacgtgtctggtgtctgacatgtgtca 433  Q
    |||||||||| |||||||||||||| ||| | |||||||||||  ||||||||||    
T  31586217 ctctatagcactgacacttctgatcaaagccatgtctggtgtccaacatgtgtca 31586271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 5041196 - 5041237
Alignment:
Q  379 ctctatagcattgacacttctgatcgaagacgtgtctggtgt 420  Q
    |||| ||||| |||||||| ||||||||||||||||||||||    
T  5041196 ctctgtagcactgacacttttgatcgaagacgtgtctggtgt 5041237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 27219891 - 27219851
Alignment:
Q  392 acacttctgatcgaagacgtgtctggtgtctgacatgtgtc 432  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  27219891 acacttctgatcgaaggtgtgtctggtgtctaacatgtgtc 27219851  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 13635676 - 13635634
Alignment:
Q  384 tagcattgacacttctgatcgaagacgtgtctggtgtctgaca 426  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||    
T  13635676 tagcactgacacttctgatagaaggcgtgtctggtgtctgaca 13635634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 21110706 - 21110752
Alignment:
Q  392 acacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgtc 438  Q
    |||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  21110706 acacttctgatcgaaagcgtgtttggtgtctgacatgtgtcaatgtc 21110752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 14774168 - 14774140
Alignment:
Q  379 ctctatagcattgacacttctgatcgaag 407  Q
    |||||||||||||||||||||||||||||    
T  14774168 ctctatagcattgacacttctgatcgaag 14774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 414669 - 414714
Alignment:
Q  392 acacttctgatcgaagacgtgtctggtgtctgacatgtgtcagtgt 437  Q
    |||| |||||||||||  |||||||||||||||||||||| |||||    
T  414669 acacctctgatcgaagttgtgtctggtgtctgacatgtgttagtgt 414714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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