View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_172 (Length: 286)
Name: NF0412_low_172
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_172 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 273
Target Start/End: Complemental strand, 10384058 - 10383814
Alignment:
| Q |
29 |
agaatccatgtgtgcaactgtttcaaaaaatcaagatatagctgaatcatatggcttctttgttaatgaaatagatacaaatcactttggtggattttgt |
128 |
Q |
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| T |
10384058 |
agaatccttgtgtgcaactgtttcaaaaaatcaagatatagctgaatcatatggcttctttgttaatgaaatggatacaaatcactttggtggattttgt |
10383959 |
T |
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| Q |
129 |
caggtaaataatcatatgtttgaaacagcttataccatccatgctaactgctgtgaagatctcagaagcaaagttcatgacatgaagattgttctacaag |
228 |
Q |
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| T |
10383958 |
caggtaaataatcatatgttcgaaacagcttataccatccatgctaactgctgtgaagatctcagaagcaaagttcatgacatgaagattgttctacaag |
10383859 |
T |
|
| Q |
229 |
attggatccggtttcgaaatggcgcgcagaagaacaatgcaacag |
273 |
Q |
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| T |
10383858 |
attggatccggtttcgaaatggcgtgcagaagaacaatgcaacag |
10383814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 99 - 247
Target Start/End: Complemental strand, 10380802 - 10380654
Alignment:
| Q |
99 |
atagatacaaatcactttggtggattttgtcaggtaaataatcatatgtttgaaacagcttataccatccatgctaactgctgtgaagatctcagaagca |
198 |
Q |
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||||||| |||||| ||||| ||||| |||||| | ||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| |
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| T |
10380802 |
atagatagaaatcagtttggcggattctgtcagcttaataacgatatgtttgaaacagtgtataccatccatgctaactgttgtgatgatctcacaagca |
10380703 |
T |
|
| Q |
199 |
aagttcatgacatgaagattgttctacaagattggatccggtttcgaaa |
247 |
Q |
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| T |
10380702 |
aagttcatgacatgacgattgttctagatgattggatccgctttagaaa |
10380654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 17732427 - 17732283
Alignment:
| Q |
99 |
atagatacaaatcactttggtggattttgtcaggtaaataatcatatgtttgaaacagctta-----taccatccatgctaactgctgtgaagatctcag |
193 |
Q |
| |
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|||||||||||||| ||||| ||||| |||||| |||||| |||||||||||| || ||| |||||||||||||| ||||||||| || ||| | |
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| T |
17732427 |
atagatacaaatcagtttggcggattctgtcagcctaataatgatatgtttgaaagagtttactttataccatccatgctagctgctgtgatgacctccg |
17732328 |
T |
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| Q |
194 |
aagcaaagttcatgacatgaagattgttctacaagattggatccg |
238 |
Q |
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| T |
17732327 |
aagcaaagttcatgacttgacaattgttctaaatgattggatccg |
17732283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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