View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_175 (Length: 285)
Name: NF0412_low_175
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_175 |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0181 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 8219 - 8122
Alignment:
| Q |
40 |
cgagtgagatgaaactaagatttgcaaattcagtttttgtacaaacaatacaaaaatggttataacaataacaacctcattgacatttatttatgaag |
137 |
Q |
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| T |
8219 |
cgagcgagatcaaactgagatttgcaaattcagtttttgtacaaacaatacaaaaatggttataacaataacaacctcattgacatttatttatgaag |
8122 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 30771551 - 30771492
Alignment:
| Q |
60 |
tttgcaaattcagtttttgtacaaacaatacaaaaatggttataacaataacaacctcat |
119 |
Q |
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| T |
30771551 |
tttgcaaattcaatatttgcacaaatgatacagaaatggttataacaataacaacctcat |
30771492 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 25759952 - 25760030
Alignment:
| Q |
41 |
gagtgagatgaaactaagatttgcaaattcagtttttgtacaaacaatacaaaaatggttataacaataacaacctcat |
119 |
Q |
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| T |
25759952 |
gagtgagatcaaactgaagtttgcaaattcaatatttgcacaaacgatacataaatgattacaacaataataacctcat |
25760030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 29479616 - 29479693
Alignment:
| Q |
42 |
agtgagatgaaactaagatttgcaaattcagtttttgtacaaacaatacaaaaatggttataacaataacaacctcat |
119 |
Q |
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| T |
29479616 |
agtgagatcaaactaaagtttgcaaattcaatatttgcacaaacgatacatgaatggttacaacaataataaactcat |
29479693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 29034604 - 29034544
Alignment:
| Q |
60 |
tttgcaaattcagtttttgtacaaacaatacaaaaatggttataacaataacaacctcatt |
120 |
Q |
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| T |
29034604 |
tttgcaaattcaatatttaaacaaatgatacagaaatggttataacaataataacctcatt |
29034544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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