View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_177 (Length: 285)
Name: NF0412_low_177
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_177 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 24 - 273
Target Start/End: Original strand, 7934497 - 7934746
Alignment:
| Q |
24 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcgttattctttca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7934497 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttca |
7934596 |
T |
|
| Q |
124 |
ttccattgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934597 |
ttccattgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattt |
7934696 |
T |
|
| Q |
224 |
tagattaaaaaataataattggtcataagataccatttagtgactaccta |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934697 |
tagattaaaaaataataattggtcataagataccatttagtgactaccta |
7934746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1112 times since January 2019
Visitors: 3076