View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_179 (Length: 284)
Name: NF0412_low_179
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_179 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 26414171 - 26414412
Alignment:
| Q |
30 |
ctatgaaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414171 |
ctatgaaccaatcaatacattgtacaccccaaacatatgagctacgaaccaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtca |
26414270 |
T |
|
| Q |
130 |
tttcttaaattaataataaaaatacatatttgcatcagtgcaaagatatatacaccgcaaaatcaaaggcagtgataggaaaagctataaaaataataat |
229 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26414271 |
tttcttaaattaat---aaaaatacatatttgcatcagtgcaaagatatatacaccgcaaaatcaaaggtagtgataggaaaagctataaaaataataat |
26414367 |
T |
|
| Q |
230 |
aaaacgataacctgtgagcattcatcattttcagttttgttcatc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26414368 |
aaaacgataacctgtgagcattcatcattttcagttttgttcatc |
26414412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 27986795 - 27986615
Alignment:
| Q |
35 |
aaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttct |
134 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||| |||| |||||||||||||| ||||||| | || |||| ||||||||| || ||| |
|
|
| T |
27986795 |
aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcattaggtggg---aggatcacagttcttgtaatgtct |
27986699 |
T |
|
| Q |
135 |
taaattaataataaaaatacatatttgcatcagtgcaaagata--tatacaccgcaaaatcaaaggcagtgataggaaaagctataaaaat |
223 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
27986698 |
taaattaataa---aaatacatatttgtataagtgcaaagatatatatacaccgcaaaatctaagg----tataggaaaagctataaaaat |
27986615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 28073327 - 28073147
Alignment:
| Q |
35 |
aaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttct |
134 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||| |||| |||||||||||||| ||||||| | || |||| ||||||||| || ||| |
|
|
| T |
28073327 |
aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcattaggtggg---aggatcacagttcttgtaatgtct |
28073231 |
T |
|
| Q |
135 |
taaattaataataaaaatacatatttgcatcagtgcaaagata--tatacaccgcaaaatcaaaggcagtgataggaaaagctataaaaat |
223 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
28073230 |
taaattaataa---aaatacatatttgtataagtgcaaagatatatatacaccgcaaaatctaagg----tataggaaaagctataaaaat |
28073147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 3417101 - 3417170
Alignment:
| Q |
111 |
agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttgcatcagtgcaaagatatatac |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| |
|
|
| T |
3417101 |
agtagcatagttcttgtcatttcttaaattaata--aaaaatacatatttgtatagatgcaaatatatatac |
3417170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 22022602 - 22022568
Alignment:
| Q |
111 |
agtatcatagttcttgtcatttcttaaattaataa |
145 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
22022602 |
agtagcatagttcttgtcatttcttaaattaataa |
22022568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 44472527 - 44472480
Alignment:
| Q |
111 |
agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttg |
161 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44472527 |
agtagcatggttcttgtcatttcttaaatta---ataaaaatacatatttg |
44472480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 6507907 - 6507954
Alignment:
| Q |
111 |
agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttg |
161 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6507907 |
agtagcatggttcttgtcatttcttaaat---taataaaaatacatatttg |
6507954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1185 times since January 2019
Visitors: 3078