View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_187 (Length: 280)
Name: NF0412_low_187
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_187 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 34338451 - 34338577
Alignment:
| Q |
50 |
tggattcagttccagactcaacaccgctctataatgtttgttttggtagagatgcatggcatcatggccgaaacaaacaccacaacaatgattttacgtg |
149 |
Q |
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| T |
34338451 |
tggattcagttccagactcaacaccgctctataatgtttgttttggtagagatgcatgtcatcatggccgaaacaaacaccacaacaatgattttacgtg |
34338550 |
T |
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| Q |
150 |
aaaaatacatcgaaggtgacattgcta |
176 |
Q |
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| T |
34338551 |
aaaaatacatcgaaggtgacattgcta |
34338577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 34336002 - 34336072
Alignment:
| Q |
110 |
atcatggccgaaacaaacaccacaacaatgattttacgtgaaaaatacatcgaaggtgacattgctaatgt |
180 |
Q |
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| T |
34336002 |
atcatggccaaaacaaacatcacgacaatgattttcggtgaaaaaaacattgaaggtgacatcgttaatgt |
34336072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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