View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_188 (Length: 280)

Name: NF0412_low_188
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_188
NF0412_low_188
[»] chr1 (2 HSPs)
chr1 (30-280)||(7099859-7100110)
chr1 (32-280)||(7581138-7581387)
[»] chr5 (17 HSPs)
chr5 (30-280)||(17983345-17983587)
chr5 (68-280)||(30206960-30207173)
chr5 (89-260)||(30521101-30521273)
chr5 (89-260)||(30561441-30561613)
chr5 (70-206)||(30750155-30750292)
chr5 (60-206)||(30400586-30400733)
chr5 (89-206)||(30241857-30241975)
chr5 (70-171)||(30060917-30061018)
chr5 (89-260)||(30475833-30476005)
chr5 (70-280)||(29853749-29853960)
chr5 (72-206)||(29872686-29872821)
chr5 (70-171)||(17418050-17418151)
chr5 (61-280)||(30436254-30436471)
chr5 (61-280)||(30337973-30338193)
chr5 (89-280)||(30483839-30484031)
chr5 (70-280)||(30676745-30676956)
chr5 (61-280)||(30712876-30713093)
[»] chr4 (3 HSPs)
chr4 (32-280)||(13617034-13617282)
chr4 (93-263)||(52352414-52352585)
chr4 (89-206)||(20296058-20296176)
[»] chr7 (1 HSPs)
chr7 (60-206)||(26707844-26707991)
[»] chr3 (1 HSPs)
chr3 (89-138)||(25293417-25293466)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 7100110 - 7099859
Alignment:
Q  30 cctcaatcacgggaacatgcccaatccgtcctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagaga 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100110 cctcaatcacgggaacatgcccaacccgtcctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagaga 7100011  T
Q  130 agagcgtgctgagcttgtgaaaataggcaaggagatagta-aaaagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaaga 228  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100010 agagcgtgctgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaaga 7099911  T
Q  229 agtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttac 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099910 agtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttac 7099859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 7581138 - 7581387
Alignment:
Q  32 tcaatcacgggaacatgcccaatccgtcctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaag 131  Q
    ||||||| |||||||||| |||  ||| ||||||| |||||||||||| |||| || ||||| ||||||||||||||||||||||||||| | |||||||    
T  7581138 tcaatcatgggaacatgctcaactcgttctttgtcagttctctctgatgatgaatgttggttattgttcaaacaatatgcatttggacatgatagagaag 7581237  T
Q  132 agcgtgctgagcttgtgaaaataggcaaggagatagt-aaaaagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaag 230  Q
    || |||| |||||||||  |||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||| |||||||||||||| ||||| ||    
T  7581238 agagtgcagagcttgtggcaataggcaaggagatagtaaaaaaatgtgcgggattgcctcttgcagcacaagcattggggtgtctaatgcactcaaggag 7581337  T
Q  231 tgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttac 280  Q
    ||||||||| | |||||| |||||||||||||| ||| | |||| |||||    
T  7581338 tgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttac 7581387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 17983587 - 17983345
Alignment:
Q  30 cctcaatcacgggaacatgcccaatccgtcctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagaga 129  Q
    ||||||| | ||||||||| ||||  |||||| |||| |||||||||||  |||| || | ||||||||||||||||||||||||||| ||| | |||||    
T  17983587 cctcaattatgggaacatgtccaactcgtcctctgtcagttctctctgacaatgaatgttagttgttgttcaaacaatatgcatttgggcatgatagaga 17983488  T
Q  130 agagcgtgctgagcttgtgaaaataggcaaggagatagta-aaaagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaaga 228  Q
    ||||| |   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||      
T  17983487 agagcctttcgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcaaaagcattagggtgcctaatgcattcaa-- 17983390  T
Q  229 agtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttac 280  Q
           |||| | |||||| |||||||||||||| ||| ||||||||||||    
T  17983389 -------aaaaggaatggtttgaaattaaagagagcgagctctgggctttac 17983345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 280
Target Start/End: Complemental strand, 30207173 - 30206960
Alignment:
Q  68 gttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatag 167  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||||||  | |||||||||||||| ||||||||| ||||||| ||||||||||    
T  30207173 gttctctctgataatgaatgttggttgttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaataggaaaggagatag 30207074  T
Q  168 taaa-aagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtga 266  Q
    |||| || ||||  |||||||||||||||||||||||||| ||  ||||||||  |||||| | ||||||||||| |||| | |||||||||||||||||    
T  30207073 taaagaaatgtgatggattgcctcttgcagcacaagcattgggaggtctaatgagttcaaggaatgaagaaaaagaatggcttgaaattaaagagagtga 30206974  T
Q  267 gatctgggctttac 280  Q
      | ||||||||||    
T  30206973 actttgggctttac 30206960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 260
Target Start/End: Original strand, 30521101 - 30521273
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgc 187  Q
    ||||||||||||||||||||||||||| ||||| | |||||  |||   |||||||||| | |||||| || ||||||||||| |||||||| |||||||    
T  30521101 tggttgttgttcaaacaatatgcatttcgacatgatagagagcagcagactgagcttgtcacaataggaaaagagatagtaaagaagtgtgggggattgc 30521200  T
Q  188 ctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaaga 260  Q
    ||||||||||||||||||| ||  | ||||||   ||||| |||| |||||||| |||| | |||||||||||    
T  30521201 ctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggcttgaaattaaaga 30521273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 260
Target Start/End: Original strand, 30561441 - 30561613
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgc 187  Q
    ||||||||||||||||||||||||||| ||||| | |||||  |||   |||||||||| | |||||| || ||||||||||| |||||||| |||||||    
T  30561441 tggttgttgttcaaacaatatgcatttcgacatgatagagagcagcagactgagcttgtcacaataggaaaagagatagtaaagaagtgtgggggattgc 30561540  T
Q  188 ctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaaga 260  Q
    ||||||||||||||||||| ||  | ||||||   ||||| |||| |||||||| |||| | |||||||||||    
T  30561541 ctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggcttgaaattaaaga 30561613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 30750292 - 30750155
Alignment:
Q  70 tctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagta 169  Q
    ||||||||||  ||| || ||| |||||||| |||||||||||||||||||||||| ||||||||||||||| || |||  |||||| ||||||||||||    
T  30750292 tctctctgatagtgaatgttggctgttgttcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 30750193  T
Q  170 aa-aagtgtggaggattgcctcttgcagcacaagcatt 206  Q
    || || |||   |||||||||||||||||| |||||||    
T  30750192 aagaaatgtaatggattgcctcttgcagcaaaagcatt 30750155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 30400733 - 30400586
Alignment:
Q  60 ctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaa 159  Q
    ||||||| | ||||||||||  ||| || ||||||||||||||| |||||||||| |||||||| |||||||||||||| || |||||   |||||| ||    
T  30400733 ctttgtctggtctctctgatagtgaatgttggttgttgttcaaagaatatgcattgggacattatagagaagagcgtgcagaacttgtagcaataggaaa 30400634  T
Q  160 ggagatagtaaa-aagtgtggaggattgcctcttgcagcacaagcatt 206  Q
    |||||||||||| || |||   |||||||||||||||||| |||||||    
T  30400633 ggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcatt 30400586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 30241857 - 30241975
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgc 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |  |||||||||||||||| |||||||| ||||| || |||   |||||||    
T  30241857 tggttgttgttcaaacaatatgcatttggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagattgtaaagaaatgtaatggattgc 30241956  T
Q  188 ctcttgcagcacaagcatt 206  Q
    ||||||||||  |||||||    
T  30241957 ctcttgcagcgaaagcatt 30241975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 30061018 - 30060917
Alignment:
Q  70 tctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagta 169  Q
    ||||||||||  ||| || |||||||||||| |||||||||||||||||||| ||| ||||||||||||||| || |||  |||||| ||||||||||||    
T  30061018 tctctctgatagtgaatgttggttgttgttcgaacaatatgcatttggacatcacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagta 30060919  T
Q  170 aa 171  Q
    ||    
T  30060918 aa 30060917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 260
Target Start/End: Complemental strand, 30476005 - 30475833
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgc 187  Q
    ||||||||||| | ||||||||||||||||  |    ||||||| || |  ||||||||   |||||| |||| ||||||||| ||||||||||||||||    
T  30476005 tggttgttgtttagacaatatgcatttggatgtgctggagaagaacgggaagagcttgtagcaataggtaaggcgatagtaaagaagtgtggaggattgc 30475906  T
Q  188 ctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaaga 260  Q
    ||||||||||||||||||| ||  |||||||||  ||||| ||||| ||||| | |||| | |||||||||||    
T  30475905 ctcttgcagcacaagcattgggaggtctaatgcgctcaaggagtgatgaaaatgaatggcttgaaattaaaga 30475833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 280
Target Start/End: Complemental strand, 29853960 - 29853749
Alignment:
Q  70 tctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagta 169  Q
    ||||||||||  ||| || ||||||||||||||| |||||||||||||| ||| ||||||||||| | |  |||||||| ||||||| |||||||| |||    
T  29853960 tctctctgatagtgaatgttggttgttgttcaaagaatatgcatttggatatttcagagaagagcatacaaagcttgtggaaataggaaaggagattgta 29853861  T
Q  170 aa-aagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgaga 268  Q
    || || |||   |||||||||||||||||| || |||| ||  || | |||   ||||| | ||||||||| | |||| | || |||||||| ||||||     
T  29853860 aagaaatgtaatggattgcctcttgcagcaaaaacattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaagacagtgagc 29853761  T
Q  269 tctgggctttac 280  Q
    | ||||||||||    
T  29853760 tttgggctttac 29853749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 29872821 - 29872686
Alignment:
Q  72 tctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa 171  Q
    ||||||||  ||| || ||||||||||||||| |||||||||||||| ||||||||||||||| | |  ||||| || ||||||| |||||||| |||||    
T  29872821 tctctgatagtgaatgttggttgttgttcaaagaatatgcatttggatattacagagaagagcatacaaagcttatggaaataggaaaggagattgtaaa 29872722  T
Q  172 -aagtgtggaggattgcctcttgcagcacaagcatt 206  Q
     || |||   |||||||||||||||||| |||||||    
T  29872721 gaaatgtaatggattgcctcttgcagcaaaagcatt 29872686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 17418050 - 17418151
Alignment:
Q  70 tctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagta 169  Q
    |||||||||| |||| || |||||||||||||||||||||||||||||| || ||| ||||||||| |  || |||||   |||||||||||| ||||||    
T  17418050 tctctctgataatgaatgttggttgttgttcaaacaatatgcatttggaaatgacaaagaagagcgcgaggaacttgtcccaataggcaaggatatagta 17418149  T
Q  170 aa 171  Q
    ||    
T  17418150 aa 17418151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 280
Target Start/End: Complemental strand, 30436471 - 30436254
Alignment:
Q  61 tttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaag 160  Q
    |||||| | ||||||||||  ||| || |||||||||||||||||| |||||||| ||| |||||   |||||| | |  || ||||| |||| || |||    
T  30436471 tttgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacgttaca---aagagcatacaaagtttgtggaaattggaaag 30436375  T
Q  161 gagatagtaaa-aagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaag 259  Q
    ||||||||||| || |||   |||||||||||||||||| ||||||| ||| || | |||   ||||| | ||||||||| | |||| | || |||||||    
T  30436374 gagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaag 30436275  T
Q  260 agagtgagatctgggctttac 280  Q
    | |||||| | ||||||||||    
T  30436274 acagtgagctttgggctttac 30436254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 30337973 - 30338193
Alignment:
Q  61 tttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaag 160  Q
    |||||| | ||||||||||  ||| || |||||||||||||||||| ||||||||  || | ||| |||||||  | |  |||||||| |||| || |||    
T  30337973 tttgtctggtctctctgatagtgattgttggttgttgttcaaacaacatgcatttaaacgtaacaaagaagaggatacaaagcttgtggaaattggaaag 30338072  T
Q  161 gagatagtaaa-aagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaag 259  Q
    ||||||||||| || |||   |||||||||||||||||| ||||||| ||| || |||||   ||||  | ||||||||| | |||| | || |||||||    
T  30338073 gagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgatattaaag 30338172  T
Q  260 agagtgagatctgggctttac 280  Q
    | |||||| | |||| |||||    
T  30338173 acagtgagctttgggatttac 30338193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 280
Target Start/End: Complemental strand, 30484031 - 30483839
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgc 187  Q
    |||||||||||||||||| |||||||| ||| | ||| |||||||| | |  |||||||| | || || |||||||||||||| || |||   |||||||    
T  30484031 tggttgttgttcaaacaacatgcatttagacgtaacaaagaagagcatacaaagcttgtggagattggaaaggagatagtaaagaaatgtaatggattgc 30483932  T
Q  188 ctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttac 280  Q
    ||||||||||| ||||||| ||| || |||||   ||||  | ||||||||| | |||| | || |||||||| |||||| | |||| |||||    
T  30483931 ctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttac 30483839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 30676745 - 30676956
Alignment:
Q  70 tctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagta 169  Q
    ||||||||||  ||| || |||||||||||||||||| ||||||||  || | ||| |||||||  | |  |||||||| |||| || ||||||||||||    
T  30676745 tctctctgatagtgattgttggttgttgttcaaacaacatgcatttaaacgtaacaaagaagaggatacaaagcttgtggaaattggaaaggagatagta 30676844  T
Q  170 aa-aagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgaga 268  Q
    || || |||   |||||||||||||||||| ||||||| ||| || | |||   ||||| | |||||| || | |||| | || |||||||| ||||||     
T  30676845 aagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagagaaggaatggcttgatattaaagacagtgagc 30676944  T
Q  269 tctgggctttac 280  Q
    | ||||||||||    
T  30676945 tttgggctttac 30676956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 30712876 - 30713093
Alignment:
Q  61 tttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaag 160  Q
    |||||| | ||||||||||  ||| || |||||||||||||||||| |||||||| ||| |||||   |||||| | |  || ||||| ||||||| |||    
T  30712876 tttgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacgttaca---aagagcatacaaagtttgtggaaataggaaag 30712972  T
Q  161 gagatagtaaa-aagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaag 259  Q
    ||||||| ||| || |||   |||||||| ||||||||| ||||||| ||| || | |||   ||||| | ||||||||| | |||| | || |||||||    
T  30712973 gagatagcaaagaaatgtaatggattgccacttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaatgaatggcttgatattaaag 30713072  T
Q  260 agagtgagatctgggctttac 280  Q
    | |||||| | ||||||||||    
T  30713073 acagtgagctttgggctttac 30713093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 280
Target Start/End: Complemental strand, 13617282 - 13617034
Alignment:
Q  32 tcaatcacgggaacatgcccaatccgtcctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaag 131  Q
    ||||||| |||||||||| |||  | |  |||||| ||||||| ||||  ||| || ||||| |||||||||||||||||||| | |||| | |||||||    
T  13617282 tcaatcatgggaacatgctcaactcattgtttgtcagttctctatgatggtgaatgttggttattgttcaaacaatatgcattcgaacatgatagagaag 13617183  T
Q  132 agcgtgctgagcttgtgaaaataggcaaggagatagt-aaaaagtgtggaggattgcctcttgcagcacaagcattagggtgtctaatgcattcaagaag 230  Q
    || |||  |||||| ||  |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||| || || || ||    
T  13617182 agtgtgtagagctt-tggcaataggaaaggagatagttaaaaagtgtggaggattgcctcttgcaggacaagcattggggtctctaatacactcgaggag 13617084  T
Q  231 tgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttac 280  Q
    || |||||| | |||||  ||||||| |||||| ||| | |||| |||||    
T  13617083 tggagaaaaggaatggtgtgaaattagagagagcgagctttgggatttac 13617034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 52352585 - 52352414
Alignment:
Q  93 tgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgcctct 191  Q
    |||| ||||||||||||||||||| |||| | | |||||| || |  ||||| |||  ||||||||| | ||||||||| |||||||| |||||||||||    
T  52352585 tgttattcaaacaatatgcatttgaacatgatatagaagaacgagaagagctagtggcaataggcaaagcgatagtaaagaagtgtgggggattgcctct 52352486  T
Q  192 tgcagcacaagcattagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagag 263  Q
    ||| ||||||||||||||  |||||||||  ||||||| || |||||| | |||| | ||||||||||||||    
T  52352485 tgctgcacaagcattaggaggtctaatgcgctcaagaaatggagaaaaggaatgggttgaaattaaagagag 52352414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 20296058 - 20296176
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaa-aagtgtggaggattgc 187  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| | |  |||||||| ||||||| |||||||||||||| || |||   |||||||    
T  20296058 tggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaagaaatgtaatggattgc 20296157  T
Q  188 ctcttgcagcacaagcatt 206  Q
    ||||||||||| |||||||    
T  20296158 ctcttgcagcaaaagcatt 20296176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 26707991 - 26707844
Alignment:
Q  60 ctttgtcggttctctctgatcatgagtgctggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaa 159  Q
    ||||||| | ||||||||||  ||| || |||||||||||||||||| |||||||| |||||||||||||||||| | |  |||||||| ||||||| ||    
T  26707991 ctttgtctggtctctctgatagtgactgttggttgttgttcaaacaacatgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaa 26707892  T
Q  160 ggagatagtaaaaag-tgtggaggattgcctcttgcagcacaagcatt 206  Q
    ||||||||||||||  |||   ||||| |||||||||||| |||||||    
T  26707891 ggagatagtaaaaaaatgtaatggattacctcttgcagcaaaagcatt 26707844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 25293417 - 25293466
Alignment:
Q  89 tggttgttgttcaaacaatatgcatttggacattacagagaagagcgtgc 138  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  25293417 tggttgttgttcaaacaatatgcatttggacattacaaagatgagtgtgc 25293466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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