View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_193 (Length: 278)
Name: NF0412_low_193
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_193 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 39 - 233
Target Start/End: Complemental strand, 14435509 - 14435315
Alignment:
| Q |
39 |
atgaatcagatatggcttctcatgatagagctttcctacttttcaaatttttgtaatgggaaattaaattttcaaatgataaacctactgtttaaatata |
138 |
Q |
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| T |
14435509 |
atgaatcagatatggcttctcatgatagagctttcctacttttcaaatttttgtaatgggaaattaaattttcaaatgataaacctactgtttaaatata |
14435410 |
T |
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| Q |
139 |
tataatgttgggaaattaacacataaatatggcaacacaccaaaatatacagaggaaataaaattccccaaacttgcaagaatctatgaggagcg |
233 |
Q |
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| T |
14435409 |
tataatgttgggaaattaacacataaatatggcaacacaccaaaatatacagagaaaataaaattccccaaacttgcaagaatctatgaggagcg |
14435315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 6858073 - 6857997
Alignment:
| Q |
150 |
gaaattaacacataaatatggcaacacaccaaaatatacagaggaaataaaattccccaaacttgcaagaatctatgag |
228 |
Q |
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| T |
6858073 |
gaaattaacacataaatatggtaacacatcaa--tatgcagcggaaataaaatttcccaaacttgcaagaatctatgag |
6857997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 25433215 - 25433136
Alignment:
| Q |
151 |
aaattaacacataaatatggcaacacaccaaaatatacagaggaaataaaattccccaaacttgcaagaatctatgaggagc |
232 |
Q |
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| T |
25433215 |
aaattaacacatatatatggtaacacaccaa--tgcgcagtggaaataaatttccctaaacttgcaagaatctctaaggagc |
25433136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 28338989 - 28339029
Alignment:
| Q |
192 |
ggaaataaaattccccaaacttgcaagaatctatgaggagc |
232 |
Q |
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| T |
28338989 |
ggaaataaaatttctcaaacttgcaagaatctatgaggagc |
28339029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 35201364 - 35201395
Alignment:
| Q |
193 |
gaaataaaattccccaaacttgcaagaatcta |
224 |
Q |
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| T |
35201364 |
gaaataaaattccccaaacttgcaagaatcta |
35201395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 35870291 - 35870254
Alignment:
| Q |
195 |
aataaaattccccaaacttgcaagaatctatgaggagc |
232 |
Q |
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| T |
35870291 |
aataaaattctccaaacttgcaagaatgtatgaggagc |
35870254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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