View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_194 (Length: 278)

Name: NF0412_low_194
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_194
NF0412_low_194
[»] chr1 (1 HSPs)
chr1 (30-263)||(33436837-33437067)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 33437067 - 33436837
Alignment:
Q  30 ctattatcctataatactctcttctataccattgtctaaatcggttttagtaatttatagtaacatctaatgctagatctatattaaaatcttgtccaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33437067 ctattatcctataatactctcttctataccattgtctaaatcggtttta---atttatagtaacatctaatgctagatctatattaaaatcttgtccaaa 33436971  T
Q  130 aataaactaaaatatataatgcaacattcaatgattccgtcgtacccataaaatcttgtctgatagcacttttcaattgtcaaaacaagaagcccacaag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33436970 aataaactaaaatatataatgcaacattcaatgattccgtcgtacccataaaatcttgtctgataacacttttcaattgtcaaaacaagaagcccacaag 33436871  T
Q  230 cgtgatagtaaactgttggaaagatttacacgtc 263  Q
    ||||||||||||||||||||||||||||||||||    
T  33436870 cgtgatagtaaactgttggaaagatttacacgtc 33436837  T

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