View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_195 (Length: 277)

Name: NF0412_low_195
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_195
NF0412_low_195
[»] chr4 (8 HSPs)
chr4 (159-277)||(3762512-3762630)
chr4 (165-277)||(3776599-3776711)
chr4 (165-267)||(3745722-3745824)
chr4 (165-277)||(3780912-3781024)
chr4 (165-267)||(3751539-3751641)
chr4 (173-267)||(3755414-3755508)
chr4 (173-267)||(3766942-3767036)
chr4 (230-267)||(3789125-3789162)
[»] chr5 (1 HSPs)
chr5 (57-154)||(42010321-42010418)
[»] chr3 (1 HSPs)
chr3 (57-154)||(1245659-1245756)
[»] chr7 (1 HSPs)
chr7 (175-267)||(25985499-25985591)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 3762512 - 3762630
Alignment:
Q  159 cactgtcaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagc 258  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
Q  259 aaaattcattgtcacaaga 277  Q
    |||||||| ||||| ||||    
T  3762612 aaaattcactgtcataaga 3762630  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 3776599 - 3776711
Alignment:
Q  165 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt 264  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaaaatt 3776698  T
Q  265 cattgtcacaaga 277  Q
    |||||||| ||||    
T  3776699 cattgtcataaga 3776711  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 3745722 - 3745824
Alignment:
Q  165 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt 264  Q
    ||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaagt 3745821  T
Q  265 cat 267  Q
    |||    
T  3745822 cat 3745824  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 3780912 - 3781024
Alignment:
Q  165 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt 264  Q
    ||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||  |||||| |||||||||||||||||||| |||||||||||    
T  3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaaaatt 3781011  T
Q  265 cattgtcacaaga 277  Q
    |||||||| ||||    
T  3781012 cattgtcataaga 3781024  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 3751539 - 3751641
Alignment:
Q  165 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt 264  Q
    |||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||    
T  3751539 caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagtt 3751638  T
Q  265 cat 267  Q
    |||    
T  3751639 cat 3751641  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 3755414 - 3755508
Alignment:
Q  173 acaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaattcat 267  Q
    ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||   |||||||||||||||||||||||| | ||||||||||||||    
T  3755414 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcat 3755508  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 3766942 - 3767036
Alignment:
Q  173 acaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaattcat 267  Q
    ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||   |||||||||||||||||||||||| | ||||||||||||||    
T  3766942 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcat 3767036  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 3789125 - 3789162
Alignment:
Q  230 cttccattatactttccttcaatcaaagcaaaattcat 267  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  3789125 cttccattatactttccttcaaacaaagcaaagttcat 3789162  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
Q  57 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct 154  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42010418 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct 42010321  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
Q  57 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct 154  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  1245756 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct 1245659  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 25985591 - 25985499
Alignment:
Q  175 aggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaattcat 267  Q
    |||||| ||||||||||||| |  | | |||||||||||||| |||||  | || || ||||| ||||| |||||||| | ||||||||||||    
T  25985591 aggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcat 25985499  T

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