View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_199 (Length: 275)
Name: NF0412_low_199
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_199 |
 | |
|
| [»] scaffold0101 (1 HSPs) |
| | |
|
| [»] scaffold0699 (1 HSPs) |
| | |
|
| [»] scaffold0368 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 3288418 - 3288619
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3288418 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgt |
3288517 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
3288518 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
3288617 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
3288618 |
gg |
3288619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 11843354 - 11843244
Alignment:
| Q |
101 |
gtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacggg |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| | ||| ||||||| |
|
|
| T |
11843354 |
gtacgatgaagaagttgtgtttgcagctgtgtatttggttctgatggagaagagtaatagtta-ggttttaaaaattacaaaaatg-gcctaaaaacggt |
11843257 |
T |
|
| Q |
201 |
tttaaatgaaaag |
213 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
11843256 |
tttaagtgaaaag |
11843244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 38566801 - 38566600
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38566801 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttggtacggtgaagaagttgagtttgtggctgtgt |
38566702 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38566701 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
38566602 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
38566601 |
gg |
38566600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 7199432 - 7199231
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7199432 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgt |
7199333 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
7199332 |
atttggttctggaggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
7199233 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
7199232 |
gg |
7199231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 55682210 - 55682009
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55682210 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacaaggagatggatttgttttgttggtacgatgaagaagttgagtttgtggctgtgt |
55682111 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
55682110 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
55682011 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
55682010 |
gg |
55682009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 41055410 - 41055603
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41055410 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgt |
41055509 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
41055510 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattt |
41055603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 51470005 - 51470205
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
51470005 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagaagaggagatggatttttttt-ttggtaagatgaagaagttgagtttgtggctgtgt |
51470103 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
51470104 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
51470203 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
51470204 |
gg |
51470205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 37517398 - 37517598
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37517398 |
gagatgatgagaggagaacaaagatgggttctgagatgatgagacgaggagatggatttattttgttggtacgatgaagaagttgagtttgtggctgtgt |
37517497 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||| || ||||| |||||||||||||| |
|
|
| T |
37517498 |
atttggctatggtggagaagagtaatagttagggtttt-aaaattacaaaaatgacccttaaaacagttttaaattaagggaaatttagtattttacaca |
37517596 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
37517597 |
gg |
37517598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 37521614 - 37521814
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37521614 |
gagatgatgagaggagaacaaagatgggttctgagatgatgagacgaggagatggatttattttgttggtacgatgaagaagttgagtttgtggctgtgt |
37521713 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||| || ||||| |||||||||||||| |
|
|
| T |
37521714 |
atttggctatggtggagaagagtaatagttagggtttt-aaaattacaaaaatgacccttaaaacagttttaaattaagggaaatttagtattttacaca |
37521812 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
37521813 |
gg |
37521814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 374945 - 375083
Alignment:
| Q |
97 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaa |
196 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
374945 |
gttggtacgatgaagaagttgtgtttgaggctgtgtatttggttatgatagagaagagtaatagttatggttttgaaaattacaaaattgacccttaaaa |
375044 |
T |
|
| Q |
197 |
cgggtttaaatgaaaag-aaatctagtattttacacagg |
234 |
Q |
| |
|
||| ||||| ||||| | |||||| |||||||||||||| |
|
|
| T |
375045 |
cggttttaagtgaaaggaaaatcttgtattttacacagg |
375083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 48236280 - 48236171
Alignment:
| Q |
105 |
gatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattaca-aaaacgacccttaaaacgggttt |
203 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
48236280 |
gatgaagaagttgtgtttgcggctgtgtatttggttctgatggagaagagtaatagttagggttttgaaaattacaaaaaatgacccttaaaacgggttt |
48236181 |
T |
|
| Q |
204 |
aaatgaaaag |
213 |
Q |
| |
|
|| ||||||| |
|
|
| T |
48236180 |
aagtgaaaag |
48236171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 49811792 - 49811659
Alignment:
| Q |
101 |
gtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattac-aaaaacgacccttaaaacgg |
199 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
49811792 |
gtacgatgaagaagttgtttttgcagttgtgtatttggttctgatggagaagagt-atagttaacgttttgaaaattacaaaaaatgacccttaaaacgg |
49811694 |
T |
|
| Q |
200 |
gtttaaatgaaaagaaatctagtattttacacagg |
234 |
Q |
| |
|
||||| |||| | ||||| |||||||||||||| |
|
|
| T |
49811693 |
ttttaagtgaagggcaatcttgtattttacacagg |
49811659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 39759580 - 39759379
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39759580 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgt |
39759481 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
39759480 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtatttcacaca |
39759381 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
39759380 |
gg |
39759379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 43823407 - 43823607
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43823407 |
gagatgaagagaggagaacaaagatgggt-ctgagatgatgagacgaggagatggattttttttgttggtatgatgaagaagttgagtttgtggctgtgt |
43823505 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
43823506 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaagggaaatctagtaatttacaca |
43823605 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
43823606 |
gg |
43823607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 53286409 - 53286519
Alignment:
| Q |
101 |
gtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacggg |
200 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||||| |
|
|
| T |
53286409 |
gtacgatgaagaagttgcgtttgcagctgtgtatttggttctgatggagaagagtaatagtta-ggttttgaaaattacaaaaatg-gcctaaaaacggt |
53286506 |
T |
|
| Q |
201 |
tttaaatgaaaag |
213 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
53286507 |
tttaagtgaaaag |
53286519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 52004770 - 52004971
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52004770 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgt |
52004869 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
52004870 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaaggaaaatctagtattttacaca |
52004969 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
52004970 |
gg |
52004971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 52539508 - 52539305
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnn--gttggtacgatgaagaagttgagtttgtggctgt |
130 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52539508 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagaagaggagatggtatttttttttgttggtacgatgaagaagttgagtttgtggctgt |
52539409 |
T |
|
| Q |
131 |
gtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttaca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
52539408 |
gtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttaca |
52539309 |
T |
|
| Q |
231 |
cagg |
234 |
Q |
| |
|
|||| |
|
|
| T |
52539308 |
cagg |
52539305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 20010720 - 20010857
Alignment:
| Q |
97 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20010720 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggctctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa |
20010819 |
T |
|
| Q |
197 |
cgggtttaaatgaaaagaaatctagtattttacacagg |
234 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
20010820 |
cggttttaaatgaagggaaatctagtattttacacagg |
20010857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 42872597 - 42872734
Alignment:
| Q |
97 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaa |
196 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42872597 |
gttggtacgatgaagaagttgtgtttgcggctgtgtatttggttctgatggagaagagtaatagttagggttttgaaaattacaaaaaagacccttaaaa |
42872696 |
T |
|
| Q |
197 |
cgggtttaaatgaaaagaaatctagtattttacacagg |
234 |
Q |
| |
|
|| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
42872697 |
tggttttaagtgaagggaaatcctgtattttacacagg |
42872734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 18916 - 18716
Alignment:
| Q |
34 |
agatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgta |
133 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18916 |
agatgaagagaggagaacaaagatgggttctgagatgatgagaagaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgta |
18817 |
T |
|
| Q |
134 |
tttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacacag |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
18816 |
tttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacag |
18717 |
T |
|
| Q |
234 |
g |
234 |
Q |
| |
|
| |
|
|
| T |
18716 |
g |
18716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 33458292 - 33458493
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33458292 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttgatacgatgaagaagttgagtttgtggctgtgt |
33458391 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
33458392 |
atttggttctggtggagaagagtaatagtcagggttttgaaaattacaaaaatgaccctcaaaacggttttaaatgaagggaaatctagtattttacaca |
33458491 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
33458492 |
gg |
33458493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 34478871 - 34479073
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnn-gttggtacgatgaagaagttgagtttgtggctgtg |
131 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
34478871 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggaaatggatttttttttgttggtaagatgaagaagttgagtttgtggatgtg |
34478970 |
T |
|
| Q |
132 |
tatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacac |
231 |
Q |
| |
|
|||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
34478971 |
tatttgattccggtggagaagagtaataggtagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctaatattttacac |
34479070 |
T |
|
| Q |
232 |
agg |
234 |
Q |
| |
|
||| |
|
|
| T |
34479071 |
agg |
34479073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 21472966 - 21472913
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatg |
86 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| | |||| || |||||| |
|
|
| T |
21472966 |
gagatgaagagaggagaacaaagatgggttctgcgatcaagagatgatgagatg |
21472913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 46067129 - 46067326
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
46067129 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatggattttttttgttgataagatgaagaagttgagtttgtggctgtgt |
46067228 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttaca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
46067229 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacacttaaaacggttttaaatgatgggaaatctagtattttaca |
46067326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 33516377 - 33516557
Alignment:
| Q |
54 |
agatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33516377 |
agatgggttctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaaga |
33516476 |
T |
|
| Q |
154 |
gtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacacagg |
234 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
33516477 |
gtaatagttagggttttgaaaattaccaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacacagg |
33516557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 11591640 - 11591440
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
11591640 |
gagatgaagagaggagaacaaagatgggttctgagatgatgagacgaggagatgaattttttttgttggaacgaagaagaagttgagtctgtggctgtgt |
11591541 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11591540 |
atttggttctg-tggagaagagtaatagttagggttttaaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
11591442 |
T |
|
| Q |
233 |
gg |
234 |
Q |
| |
|
|| |
|
|
| T |
11591441 |
gg |
11591440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 43613986 - 43613823
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43613986 |
gagatgaagagaggagaacaaagatggattctgagatgatgagacgaggagatggattttttttgttggtacgatgaagaagttgagtttgtggctgtgt |
43613887 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43613886 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa |
43613823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 48826910 - 48826802
Alignment:
| Q |
101 |
gtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacggg |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
48826910 |
gtacgatgaagaagttgtatttgcggctgtgtatttggttctgatggagaagagtaatagttagggttttgaaaattacaaaaatga-ctttaaaacggt |
48826812 |
T |
|
| Q |
201 |
tttaaatgaa |
210 |
Q |
| |
|
||||| |||| |
|
|
| T |
48826811 |
tttaagtgaa |
48826802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 48827026 - 48826994
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctg |
65 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
48827026 |
gagatgaagagaggagaacaaagatgggttctg |
48826994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 41992510 - 41992311
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnngttggtacgatgaagaagttgagtttgtggctgtgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41992510 |
gagatgaagagaggagaacaaagatgggttatgagataatgagaagaggagatggattttttttgttggtatgatgaagaagttgagtttgtggctgtgt |
41992411 |
T |
|
| Q |
133 |
atttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacaca |
232 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41992410 |
atttggttatggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaacggttttaaatgaagggaaatctagtattttacaca |
41992311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 37369570 - 37369772
Alignment:
| Q |
33 |
gagatgaagagaggagaacatagatgggttctgagatgatgagacgaggagatggannnnnnnn-gttggtacgatgaagaagttgagtttgtggctgtg |
131 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37369570 |
gagatgaagagaggagaacaaagatggattctgagatgatgagacgaggagatggaattttttttgttggtacgatgaagaagttgagtttgtggctgtg |
37369669 |
T |
|
| Q |
132 |
tatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaacgggtttaaatgaaaagaaatctagtattttacac |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| || ||||||||||||||||||| |
|
|
| T |
37369670 |
tatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgaccgttaaaacagttttaaattaagggaaatctagtattttacac |
37369769 |
T |
|
| Q |
232 |
agg |
234 |
Q |
| |
|
||| |
|
|
| T |
37369770 |
agg |
37369772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0699 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 19 - 156
Alignment:
| Q |
97 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaatgacccttaaaa |
118 |
T |
|
| Q |
197 |
cgggtttaaatgaaaagaaatctagtattttacacagg |
234 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |
|
|
| T |
119 |
tggttttaaatgaagggaaatctagtattttacacagg |
156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 7992 - 7855
Alignment:
| Q |
97 |
gttggtacgatgaagaagttgagtttgtggctgtgtatttggttctggtggagaagagtaatagttagggttttgaaaattacaaaaacgacccttaaaa |
196 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || | ||| |
|
|
| T |
7992 |
gttggtacgatgaagaagttgtgtttgcggctgtgtatttggttctgatggagaagagtaatagttagggttttgaaaattacaaaaaagaacccttaaa |
7893 |
T |
|
| Q |
197 |
cgggtttaaatgaaaagaaatctagtattttacacagg |
234 |
Q |
| |
|
|| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
7892 |
tggttttaagtgaagggaaatcctgtattttacacagg |
7855 |
T |
|
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