View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_204 (Length: 273)
Name: NF0412_low_204
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_204 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 52 - 231
Target Start/End: Complemental strand, 32024982 - 32024807
Alignment:
| Q |
52 |
cataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaacccaaaaga |
151 |
Q |
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| T |
32024982 |
cataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaacccaaaaga |
32024883 |
T |
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| Q |
152 |
gactcacatatctattttcctcattattaaagattatcaaaggtcaacgaacaaactaagtgtatgtttggtttgtcttc |
231 |
Q |
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| T |
32024882 |
gactcacatatctattttcctcattattaaagattatcaaaggtc----aacaaactaagtgtatgtttggtttgtcttc |
32024807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 32026389 - 32026304
Alignment:
| Q |
77 |
tagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaacccaaaagagactcacatat |
162 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||| ||| || || |||||||||| |||||||| |
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| T |
32026389 |
tagaaaacaaccaaaatgaagtcaaacacacagatcatcaaaatttcatttactcatacacttaaatccaaaagagattcacatat |
32026304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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