View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_205 (Length: 272)

Name: NF0412_low_205
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_205
NF0412_low_205
[»] chr2 (1 HSPs)
chr2 (52-234)||(10121359-10121541)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 10121359 - 10121541
Alignment:
Q  52 ataggcatggtaataagacggcgtggagacgagttttaccttccctgtctcatctccaagagagtgtccgtaattataataactgagaaactttccatag 151  Q
    |||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10121359 ataggcatggcaatgagacggcgtggagacgagttttaccttcactgtcccatctccaagagagtgtccgtaattataataactgagaaactttccatag 10121458  T
Q  152 aaaagattagacgttagcaggaatttgcaccttccaaatccaattccaagagatattatatgtctgcttataacctttcttct 234  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10121459 aaaagattagacgttagcgagaatttgcaccttccaaatccaattccaagagatattatatgcctgcttataacctttcttct 10121541  T

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