View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_206 (Length: 272)
Name: NF0412_low_206
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_206 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 41447638 - 41447828
Alignment:
| Q |
30 |
tgagatgaatttatgtaactctggtttctaagtttcaataataaaaaagttccttaatttctttaccttgttaattttgatgctaatttgatttgtctaa |
129 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41447638 |
tgagatgaatctatgtaactctggtttctaagtttcaataataaaaaagttccttaatttctttaccttgttaattttgatgctagtttgatttgtctaa |
41447737 |
T |
|
| Q |
130 |
agatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttctccctaaagacgccaaattcg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
41447738 |
agatattggctccaatagtaatagtactttcataatgtggtattcatgaggcttaaccttgaatcttttctctctaaagacgccaaattcg |
41447828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 41457859 - 41458027
Alignment:
| Q |
30 |
tgagatgaatttatgtaactctggtttctaagtttcaataataaaaaagttccttaatttctttaccttgttaattttgatgctaatttgatttgtctaa |
129 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| | |||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
41457859 |
tgagatgaacttatgtagctctggtttctaagtttcaatattcaaaa-gttccttaattcctttaccttgttaagtttgatgctaatttgttttgtctaa |
41457957 |
T |
|
| Q |
130 |
agatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
41457958 |
agatattggctccaatagtaatagtactttcataacgtggtgttcatgaggcttaacgttgaatcttttc |
41458027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 41441238 - 41441352
Alignment:
| Q |
104 |
ttttgatgctaatttgatttgtctaaagatattggctccaatagtaatagtactttcataacgtggtattcatgaggcttaatcttgaatcttttctccc |
203 |
Q |
| |
|
|||| ||| ||||||| |||||| |||||||||| || |||||||||||||||| || | |||||||| ||| ||| || ||||||| ||||||| |
|
|
| T |
41441238 |
ttttaatgataatttgttttgtcaaaagatattgacttatatagtaatagtactttgatcaagtggtattgttgatgctcaaccttgaatattttctcaa |
41441337 |
T |
|
| Q |
204 |
taaagacgccaaatt |
218 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
41441338 |
taaaggtgccaaatt |
41441352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 16418794 - 16418670
Alignment:
| Q |
30 |
tgagatgaatttatgtaactctggtttctaagtttcaataataaaaaagttccttaatttctttaccttgttaattttgatgctaatttgatttgtctaa |
129 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| | |||| ||||||||||| |||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
16418794 |
tgagatgaacttatgtagctctggtttctaagtttcaatattcaaaa-gttccttaattcctttaccttgttaagtttgatgctgatttgttttgtctaa |
16418696 |
T |
|
| Q |
130 |
agatattggctccaatagtaatagta |
155 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
16418695 |
agatattggctcaaatagtaatagta |
16418670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 929 times since January 2019
Visitors: 3072