View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_210 (Length: 270)
Name: NF0412_low_210
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_210 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 49 - 200
Target Start/End: Original strand, 15818368 - 15818519
Alignment:
| Q |
49 |
tatcatagaaagaaattcagacaaatcattatacctcaatttaattcaagaaattcttttaatattgttttttcttatatattatgctcaagcgagttta |
148 |
Q |
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| T |
15818368 |
tatcatagaaagaaattcagacatatcattataccataatttaattcaagaaattcatttaatattgttttttcttatatattatgctcaagcgagttta |
15818467 |
T |
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| Q |
149 |
cattcagatggaattttaaagggaacctaaagtgtatcatgaatcagatttt |
200 |
Q |
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| T |
15818468 |
cattcagatggtattttaaagggaacctaaagtgtatcatgaatcagatttt |
15818519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 15831477 - 15831556
Alignment:
| Q |
49 |
tatcatagaaagaaattcagacaaatcattatacctcaatttaattcaagaaattcttttaatattgttttttcttatata |
129 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
15831477 |
tatcatagaaagtgattcagaccaatcataatacctcaatttaattcaagaaattcttttaata-tgtgttttcttatata |
15831556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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