View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_216 (Length: 268)

Name: NF0412_low_216
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_216
NF0412_low_216
[»] chr5 (1 HSPs)
chr5 (30-268)||(783206-783444)
[»] chr1 (1 HSPs)
chr1 (30-265)||(47123773-47124008)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 783206 - 783444
Alignment:
Q  30 ggtgcagccataatgagagaaggtcctaaccttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagtacaagatta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  783206 ggtgcagccataatgagagaaggtcctaaccttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagtacaagatta 783305  T
Q  130 agtatcagttttacagggtttttcctaatggtgaggttcaatatttgcatcctaaggatggtgtgtaccctgagaaggttaaccctggtcgtcaaggggt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  783306 agtatcagttttacagggtttttcctaatggtgaggttcaatatttgcatcctaaggatggtgtgtaccctgagaaggttaaccctggtcgtcaaggggt 783405  T
Q  230 tggtcagaatttcaggtctattgggaagaatgttagccc 268  Q
    |||||||||||||||||||||||||||||||||||||||    
T  783406 tggtcagaatttcaggtctattgggaagaatgttagccc 783444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 47124008 - 47123773
Alignment:
Q  30 ggtgcagccataatgagagaaggtcctaaccttcttaagttagcaaggaaagaacagtgtttggctttaggaaatagattaaggtctaagtacaagatta 129  Q
    ||||||||||| ||||| |||||||| || ||||| || ||||||||||||||||| ||||||||| | |||| ||| || ||||| ||||||||||| |    
T  47124008 ggtgcagccatcatgagggaaggtcccaatcttctcaaattagcaaggaaagaacaatgtttggctcttggaactaggttgaggtcaaagtacaagatca 47123909  T
Q  130 agtatcagttttacagggtttttcctaatggtgaggttcaatatttgcatcctaaggatggtgtgtaccctgagaaggttaaccctggtcgtcaaggggt 229  Q
    |||| || || || || || ||||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| || ||||  ||||| ||||||||    
T  47123908 agtaccaattctatagagtgtttcccaatggggaagttcaatacttgcatcccaaggatggtgtgtacccagagaaagtgaacctgggtcgccaaggggt 47123809  T
Q  230 tggtcagaatttcaggtctattgggaagaatgttag 265  Q
    ||||||||| ||  |||||||||| |||||||||||    
T  47123808 tggtcagaactttgggtctattggtaagaatgttag 47123773  T

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