View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_219 (Length: 267)
Name: NF0412_low_219
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_219 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5181753 - 5182005
Alignment:
| Q |
1 |
tttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5181753 |
tttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgc |
5181852 |
T |
|
| Q |
101 |
ttcacgggatggttttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----tt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| || |
|
|
| T |
5181853 |
ttcacgggatggttttggggatggattgttacaatgaagataacttttatattgattttaaattttaaataattaacaaaaagaatgaaataagttaatt |
5181952 |
T |
|
| Q |
197 |
gatgtatatattgacgccattggaaaaac-tttaagatttttatgatgatgtc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
5181953 |
aatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtc |
5182005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5159518 - 5159757
Alignment:
| Q |
1 |
tttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159518 |
tttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgc |
5159617 |
T |
|
| Q |
101 |
ttcacgggatggttttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----tt |
196 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
5159618 |
ttcac------------gggatggattgttacaatgaagataacttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaatt |
5159705 |
T |
|
| Q |
197 |
gatgtatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5159706 |
aatgtatatattgacgccattggaaaaactttaagatttttatgataatgtc |
5159757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5195151 - 5195403
Alignment:
| Q |
1 |
tttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgc |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5195151 |
tttgaaaaatttgaaaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgc |
5195250 |
T |
|
| Q |
101 |
ttcacgggatggttttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----tt |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| || |
|
|
| T |
5195251 |
ttcacgggatggttttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaatt |
5195350 |
T |
|
| Q |
197 |
gatgtatatattgacgccattggaaaaac-tttaagatttttatgatgatgtc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
5195351 |
aatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtc |
5195403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 5172505 - 5172594
Alignment:
| Q |
2 |
ttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaatt |
91 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
5172505 |
ttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataattaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 4843118 - 4843028
Alignment:
| Q |
1 |
tttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaatt |
91 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
4843118 |
tttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataattaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5212730 - 5212815
Alignment:
| Q |
1 |
tttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataat |
86 |
Q |
| |
|
||||| ||||||||||||| ||| |||| || | |||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
|
|
| T |
5212730 |
tttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 4842927 - 4842849
Alignment:
| Q |
173 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgatgatgt |
247 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgt |
4842849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 5172630 - 5172677
Alignment:
| Q |
201 |
tatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
248 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtc |
5172677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1220 times since January 2019
Visitors: 3078