View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_221 (Length: 267)
Name: NF0412_low_221
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_221 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 35 - 267
Target Start/End: Complemental strand, 1053153 - 1052921
Alignment:
| Q |
35 |
tacctttgtaacaatttttatctctctaatttacgtcattatttctgttcatacttttaaattgaatcaattgaactatggagaaatttaagaaaaatga |
134 |
Q |
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| T |
1053153 |
tacctttgtaacaatttttatctctctaatttacgtcattatttctgttcatacttttaaattgaatcaattgaactatggagaaatttaagaaaaatga |
1053054 |
T |
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| Q |
135 |
atttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgtgg |
234 |
Q |
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| T |
1053053 |
atttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttagcctcctcggttgtgtgaattgtgg |
1052954 |
T |
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| Q |
235 |
catttgaaaaccatcacctccaatttgtggtgt |
267 |
Q |
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| T |
1052953 |
catttgaaaaccatcacctccaatttgtggtgt |
1052921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 267
Target Start/End: Complemental strand, 1046396 - 1046261
Alignment:
| Q |
132 |
tgaatttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattg |
231 |
Q |
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| T |
1046396 |
tgaagttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgatcttagcctccttggtggtgtgaattg |
1046297 |
T |
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| Q |
232 |
tggcatttgaaaaccatcacctccaatttgtggtgt |
267 |
Q |
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| T |
1046296 |
tgatatttcaataccattgcctccaattcgtggtgt |
1046261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 1065451 - 1065321
Alignment:
| Q |
137 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgtggca |
236 |
Q |
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| T |
1065451 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgtccttagccgtctaggcggtgtgaattttgcaa |
1065352 |
T |
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| Q |
237 |
tttgaaaaccatcacctccaatttgtggtgt |
267 |
Q |
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| T |
1065351 |
tattaaaaccattacttcgaatttgtggtgt |
1065321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 1033453 - 1033360
Alignment:
| Q |
137 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaatt |
230 |
Q |
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| T |
1033453 |
ttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt |
1033360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 1043845 - 1043750
Alignment:
| Q |
137 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaattgt |
232 |
Q |
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| T |
1043845 |
ttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgtgcttagccgtctcggtttcgtgaattgt |
1043750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 1071190 - 1071097
Alignment:
| Q |
137 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttaacctcctcggttgtgtgaatt |
230 |
Q |
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| T |
1071190 |
ttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatctgtccttagccgccttggtggtgtgaatt |
1071097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 1058387 - 1058326
Alignment:
| Q |
137 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttc |
198 |
Q |
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| T |
1058387 |
ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttc |
1058326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 1641080 - 1641141
Alignment:
| Q |
137 |
ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttc |
198 |
Q |
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| T |
1641080 |
ttaccagctgctatagcattccttgcagcaagtctgaagtcattgacgatacgaggaatttc |
1641141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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