View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_223 (Length: 266)
Name: NF0412_low_223
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_223 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5159542 - 5159305
Alignment:
| Q |
1 |
agttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn-gagagtacatagttagagatataattttcaataaataaatctgtaagaac |
99 |
Q |
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| T |
5159542 |
agttaacattttcaagtttttcaaatgttgaacatctgcagaaaaaaaaagagagtacatagttagagatataattt-caataaataaatctgtaagaac |
5159444 |
T |
|
| Q |
100 |
tattccccnnnnnnn-tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnngagtgcatatgacaaaacaagaagatgaagtctcaaatt |
198 |
Q |
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| T |
5159443 |
tattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtgcatatgacaaaacaagaagatgaagtctcaaatt |
5159344 |
T |
|
| Q |
199 |
cttggagaatcctagatgacaaattggtatgggaatatg |
237 |
Q |
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| T |
5159343 |
cttggagaatcctagatgacaaattggtatgggaatatg |
5159305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 5181608 - 5181533
Alignment:
| Q |
162 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatg |
237 |
Q |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatg |
5181533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 5195173 - 5195065
Alignment:
| Q |
3 |
ttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnn----gagagtacatagttagagatataattttcaataaataaatctgtaagaa |
98 |
Q |
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| T |
5195173 |
ttaacattttcaaatttttcaaatgttgaacatctgcagaagaaaaaaaaagagagtacatagttagagatataattttcaataaataaatcggtaagaa |
5195074 |
T |
|
| Q |
99 |
ctattcccc |
107 |
Q |
| |
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||||||||| |
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| T |
5195073 |
ctattcccc |
5195065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 5181775 - 5181710
Alignment:
| Q |
3 |
ttaacattttcaagtttttcaaatgttgaacatctgcagnnnnnnnngagagtacatagttagaga |
68 |
Q |
| |
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| T |
5181775 |
ttaacattttcaagtttttcaaatgttgaacatctgcaggaaaaaaagagagtacatagttagaga |
5181710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 4843096 - 4843133
Alignment:
| Q |
3 |
ttaacattttcaagtttttcaaatgttgaacatctgca |
40 |
Q |
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|
| T |
4843096 |
ttaacattttcaagtttttcaaatgttgaacatctgca |
4843133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
193 |
caaattcttggagaatcctagatgacaaattggtat |
228 |
Q |
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|
| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 4843149 - 4843183
Alignment:
| Q |
51 |
agagtacatagttagagatataattttcaataaat |
85 |
Q |
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|
| T |
4843149 |
agagtacatagttagagatataatattcaataaat |
4843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 5172526 - 5172489
Alignment:
| Q |
3 |
ttaacattttcaagtttttcaaatgttgaacatctgca |
40 |
Q |
| |
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|
| T |
5172526 |
ttaacattttcaattttttcaagtgttgaacatctgca |
5172489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 5212748 - 5212716
Alignment:
| Q |
7 |
cattttcaagtttttcaaatgttgaacatctgc |
39 |
Q |
| |
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|
| T |
5212748 |
cattttcaagtttctcaaatgttgaacatctgc |
5212716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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