View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_224 (Length: 266)
Name: NF0412_low_224
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_224 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 50570074 - 50569882
Alignment:
| Q |
31 |
atacttttaaatagactagataaaacaagtattgatagtgttccaattaaaatattataacttgccacgaacccaaataatgtagtgagaatgtagcccc |
130 |
Q |
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| T |
50570074 |
atactttaaaatagactagataaaacaagtattgatagtgttgcaattaaaatattataacttgccacgaacacaaataatgtagtgagaatgtagcccc |
50569975 |
T |
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| Q |
131 |
aattgacacagtagaatttacttgaagtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattct |
223 |
Q |
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| T |
50569974 |
aattgacacagtagaatttacttgaagtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattct |
50569882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 21156121 - 21156199
Alignment:
| Q |
35 |
ttttaaatagactagataaaacaagtattgatagtgttccaattaaaatattataacttgccacgaacccaaataatgta |
114 |
Q |
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|||||| |||||||||||||| || |||||||| | ||||| ||||||||| ||||| ||||||||||||||| |||| |
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| T |
21156121 |
ttttaactagactagataaaaaaa-tattgataacataccaataaaaatattagaacttaccacgaacccaaatactgta |
21156199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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