View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_232 (Length: 263)
Name: NF0412_low_232
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_232 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 15240681 - 15240458
Alignment:
| Q |
11 |
taattctatactattgaagcatttggtaaggtggtggcaacctccttctcatgcatgtgttgacgtagtccaataatcaagactagtagataataaatga |
110 |
Q |
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| T |
15240681 |
taattctatactattgaagcatttggtaaggtggtggcaacctccttctcatgcatgtgttgacgtagtccaataatcaagactagtagataataaatga |
15240582 |
T |
|
| Q |
111 |
accataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccat |
210 |
Q |
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| T |
15240581 |
accataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccat |
15240482 |
T |
|
| Q |
211 |
gagggtatcaatccttgttgtatc |
234 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
15240481 |
gagggtatcaatccttgttgtatc |
15240458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 15246905 - 15246797
Alignment:
| Q |
118 |
tgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccatgagggta |
217 |
Q |
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|||| ||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
15246905 |
tgtgcatatgataatgtatccagataatccccaattctttgggaagaacatcaacaccaaagaaattattgaaagcgaaccaaacacttccttaagggta |
15246806 |
T |
|
| Q |
218 |
tcaatcctt |
226 |
Q |
| |
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|||| |||| |
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| T |
15246805 |
tcaagcctt |
15246797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 10693576 - 10693720
Alignment:
| Q |
86 |
atcaagactagtagataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaatta |
185 |
Q |
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|||| ||| |||| || |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |
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| T |
10693576 |
atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta |
10693675 |
T |
|
| Q |
186 |
ttgaaagggaaccaaacacttccatgagggtatcaatccttgttg |
230 |
Q |
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| T |
10693676 |
ttgaaagggaaccaaacacttccatgaaggtatcaaccctagttg |
10693720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 10698182 - 10698309
Alignment:
| Q |
105 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10698182 |
aaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaaccaaacac |
10698281 |
T |
|
| Q |
205 |
ttccatgagggtatcaatccttgttgta |
232 |
Q |
| |
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||||||||||||||||| |||||||||| |
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| T |
10698282 |
ttccatgagggtatcaacccttgttgta |
10698309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 10657472 - 10657588
Alignment:
| Q |
105 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
204 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||| ||||||||| | |
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| T |
10657472 |
aaatgaaccataatgtgtaaatggtaatgtatccaaataatccccatttgtttgggatgaacatcaacaccaaagaaattattgaaagtgaaccaaacgc |
10657571 |
T |
|
| Q |
205 |
ttccatgagggtatcaa |
221 |
Q |
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||||||||||||||||| |
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| T |
10657572 |
ttccatgagggtatcaa |
10657588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 10707391 - 10707516
Alignment:
| Q |
105 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
204 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||| | | ||||||| | ||| ||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
10707391 |
aaatgaaccatattgtatatatgataaagtatccaagtgtttcccaattttctggaaagaacatcaacaccaaagaaactattgaaagggaaccaaacac |
10707490 |
T |
|
| Q |
205 |
ttccatgagggtatcaatccttgttg |
230 |
Q |
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||||||||||||||||| |||||||| |
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| T |
10707491 |
ttccatgagggtatcaacccttgttg |
10707516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 10690228 - 10690372
Alignment:
| Q |
84 |
taatcaagactagtagataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaat |
183 |
Q |
| |
|
|||||| || ||||| || | |||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||| |||||||| ||||| ||||| |
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| T |
10690228 |
taatcatgattagtacatgaaaaatgaaccatattgtgtatatgataatatatccaaataatccccaattttctgggagcaacatcaacaccaatgaaat |
10690327 |
T |
|
| Q |
184 |
tattgaaagggaaccaaacacttccatgagggtatcaatccttgt |
228 |
Q |
| |
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|| |||||| |||||||||||||||| | |||||||| |||||| |
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| T |
10690328 |
taatgaaagtgaaccaaacacttccaacaaggtatcaacccttgt |
10690372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 10633883 - 10633980
Alignment:
| Q |
106 |
aatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaaca |
203 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| || ||||||| | | || |||||||||| ||||||||||||||||| || |||||||||| |
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| T |
10633883 |
aatgaaccatgttgtgtatatgacaatgtatccaactactccccaacttttaggaaagaacatcatcaccaaagaaattattgagagcgaaccaaaca |
10633980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 33777571 - 33777440
Alignment:
| Q |
100 |
ataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaacca |
199 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| | ||| ||||||||||| ||| | |||||| || |||||||||| ||||||||| |||||| |
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|
| T |
33777571 |
ataacaaatgaaccatgctgtgtatatgataatgtatgaacatactccccaattgtttggaaggaacattaacaccaaagaaactattgaaagtgaacca |
33777472 |
T |
|
| Q |
200 |
aacacttccatgagggtatcaatccttgttgt |
231 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |
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|
| T |
33777471 |
aacacttctatgagtgtatcaattcttgttgt |
33777440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 33774936 - 33774804
Alignment:
| Q |
100 |
ataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatc----aaaaccaaagaaattattgaaaggga |
195 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||| || |||||||||| ||||||||| || |
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|
| T |
33774936 |
ataacaaatgaaccatatcgtgtatatgataatgtatcctgataatgtccaattgtttgggaggaacatcgatcaacaccaaagaaactattgaaagtga |
33774837 |
T |
|
| Q |
196 |
accaaacacttccatgagggtatcaatccttgt |
228 |
Q |
| |
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||||||||||||||||| |||||||| ||||| |
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|
| T |
33774836 |
gccaaacacttccatgagtgtatcaattcttgt |
33774804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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