View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_233 (Length: 262)
Name: NF0412_low_233
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_233 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 34516412 - 34516218
Alignment:
| Q |
24 |
atgaactcacagaagcacaaatatataataaagnnnnnnncaatggaattaaaattgaaatattcatgggaatattattatattcacaaaa-tcatatgg |
122 |
Q |
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| T |
34516412 |
atgaactcgcagaagcacaaatatataataaagaaaaaaacaatggaattaaaattgaaacattcatgggaatattat---attcacaaaaatcatatgg |
34516316 |
T |
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| Q |
123 |
nnnnnnnnnnttaatcattgcatttgaaacaagagagaaagacaacaagaacaactattacctggaaaatcacagtagacattgattctttcctagaaaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34516315 |
aaaaaaaa--ttaatcattgcatttgaaacaagagagaaagacaacaagaacaactattacctggaaaatcacagtagacactgattctttcctagaaaa |
34516218 |
T |
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