View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_237 (Length: 260)
Name: NF0412_low_237
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_237 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 25031112 - 25030926
Alignment:
| Q |
31 |
catcatcatcatcaccgcgaactcccatttcaccttcgtctcgtttggttctgaatctctcaacttctccttctcccataaggtatcaaccaacaatgat |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25031112 |
catcatcatcatcaccgcgaactcccatttcaccttcgtctcatttggttccgaatctctcaacttcgccttctcccataaggtatcaaccaacaatgat |
25031013 |
T |
|
| Q |
131 |
ggattcttcatcatcatc---atcaccgatggattcatcgccacgaacgccaatttcctcatattcatttgttattacggctgaaac |
214 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25031012 |
ggattcttcaccatcatcatcatcaccgatggattcatcgtcacgaacgccaatttcctcatatccatttgttattacggctgaaac |
25030926 |
T |
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