View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_238 (Length: 260)
Name: NF0412_low_238
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_238 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 23765860 - 23765645
Alignment:
| Q |
30 |
tgttctgatttagtatttcttaattcccttgtctaattataaattacttatttagattattttatgtatcaaattatggtgaattcgaggatgaggacta |
129 |
Q |
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| T |
23765860 |
tgttctgatttagtatttcttaattcccttgtcttattataaattacttatttagaatattttatgtatcaaattatggtgaatttcaagataaggacta |
23765761 |
T |
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| Q |
130 |
aatccttcaccggtgtaccacttaatttaaacctcaaattaaataaatctctttaatctaaatgctcatcactgcatcagatctaacttctttcttctga |
229 |
Q |
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| T |
23765760 |
---tcttaagc-gtgtaccacttaatttaacccttagattaaatcagtctccctaatctaattactcatcactgcatcagatctaacttctttcttctga |
23765665 |
T |
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| Q |
230 |
ttccccatcgttttctctct |
249 |
Q |
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|||||||||||||||||||| |
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| T |
23765664 |
ttccccatcgttttctctct |
23765645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 255
Target Start/End: Complemental strand, 23795098 - 23794862
Alignment:
| Q |
31 |
gttctgatttagtatttcttaattcccttgtctaattataaattacttatttagattattttatgtatcaaattatggtgaattcgaggatgaggacta- |
129 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
23795098 |
gttctgatttagtatttcttaattcccttgtcttattataaattacttatttggaatattttatgtattaaattatggtgaatttcaggatgaggactat |
23794999 |
T |
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| Q |
130 |
-----------aatccttcaccggtgtaccacttaatttaaacctcaaattaaataaatctctttaatctaaatgctcatcactgcatcagatctaactt |
218 |
Q |
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| T |
23794998 |
gttaaatgttaagttgttcaccggtgtaccacttaatttaatccttagattaaatcagtctccctaatctaattactcatcactacatcagatctaactt |
23794899 |
T |
|
| Q |
219 |
ctttcttctgattccccatcgttttctctctgctgct |
255 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
23794898 |
ctttcttctgattccccatcgttttctctcttctgct |
23794862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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