View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_24 (Length: 452)
Name: NF0412_low_24
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 30 - 439
Target Start/End: Complemental strand, 38224091 - 38223686
Alignment:
| Q |
30 |
caatttggcatgtcgcaagaacatacaaggtacaaaacataaataatttatttcagagcatataattttcatgtgttcagattattttatatgcttatgt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224091 |
caatttggcatgtcgcaagaacatacaaggtacaaaacataaataatttatttcagagcatataattttcatgtgttcagattattttatatgcttatgt |
38223992 |
T |
|
| Q |
130 |
aatagaagtactatagtttattgtacccnnnnnnnnnnggtactagtatagttttctcaatcttgttttgtttacagagtatatgctggaacacttacat |
229 |
Q |
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|||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38223991 |
aatagaagtactatagtttattgtacccaaaaaaaaa----attactatagttttctcaatcttgttttgtttacagagtatatgctggaacacttacat |
38223896 |
T |
|
| Q |
230 |
attgaagaaagtaaagtaccaaaaatgtgcctagatttgtatctggaacacgggacaactatggcaggaatgaaggtatacagatttggcattaacctca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38223895 |
attgaagaaagtaaagtaccaaaaatgtgcctagatttgtatctggaacacgggacaactatggcaggaatgaaggtatacagatttggcattaacctca |
38223796 |
T |
|
| Q |
330 |
gttttctcttctcttaatttcttctgaaatactaattcaatataaatgatcagtgatataatttaatagtttttctaagttttagtcttaatttccgact |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38223795 |
gttttctcttctcttaatttcttctgaaatactaattcaatataaatgatcagtgatataatttaatagtttttctaagttttagtcttaatttcctact |
38223696 |
T |
|
| Q |
430 |
atcaggccct |
439 |
Q |
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|||||||||| |
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| T |
38223695 |
atcaggccct |
38223686 |
T |
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