View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_241 (Length: 259)
Name: NF0412_low_241
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_241 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 29240385 - 29240195
Alignment:
| Q |
24 |
ctctgatttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatg |
123 |
Q |
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| T |
29240385 |
ctctgatttgtattgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacatagtg |
29240286 |
T |
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| Q |
124 |
cgaaagattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgtttataggacatc |
222 |
Q |
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| T |
29240285 |
caaaagattattttccacaacttacctatgttctgcttcagttggtagcat--------atcatcctcaagctcctgaatgaattgtttataggacatc |
29240195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 16827921 - 16827731
Alignment:
| Q |
24 |
ctctgatttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcgaactctcagacataatg |
123 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16827921 |
ctctgatttgtattcttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttacataactcaaactctcagacataatg |
16827822 |
T |
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| Q |
124 |
cgaaagattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcctgaatgaattgtttataggacatc |
222 |
Q |
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| T |
16827821 |
caaaagattattttccacaacttacctacgttctgcttcagttggtag--------tatatcatcctccagctcctgaatgaattgtttataggacatc |
16827731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 846769 - 846811
Alignment:
| Q |
180 |
tatatcatcctcaagctcctgaatgaattgtttataggacatc |
222 |
Q |
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||||||||| ||||||||||| |||||||| |||||||||||| |
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| T |
846769 |
tatatcatcttcaagctcctggatgaattgcttataggacatc |
846811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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