View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_242 (Length: 259)

Name: NF0412_low_242
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_242
NF0412_low_242
[»] chr4 (1 HSPs)
chr4 (95-242)||(49916099-49916242)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 49916242 - 49916099
Alignment:
Q  95 gtgagatgaatggtaaatagtaagtatgctactaatcctactatatactctctccatacaaagtttaagcacaattctttctttattgtaaaagtatatt 194  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    ||||||||||||||||||||    
T  49916242 gtgaaatgaatggtaaatagtaagtatgctactaatcctactatatactctctacatacaaagtttaagcacaatt----ctttattgtaaaagtatatt 49916147  T
Q  195 tctaatgtggtgtcattctcatctttgctttggccaccaatcaccata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49916146 tctaatgtggtgtcattctcatctttgctttggccaccaatcaccata 49916099  T

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