View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_243 (Length: 258)
Name: NF0412_low_243
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_243 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 38282937 - 38283060
Alignment:
| Q |
1 |
ctaggaataaaaattggcaaccaaacacttttcttaaaaattcctaggaataaattctcattatattttcctgggaaagttaattccagggagaaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38282937 |
ctaggaataaaaattggcaaccaaacacttttcttaaaaattcctaggaataaattctcattatattttcctgggaaagttaattccagggagaaatttt |
38283036 |
T |
|
| Q |
101 |
tgcatccgggaaacaaacaccccc |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38283037 |
tgcatccgggaaacaaacaccccc |
38283060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 30200070 - 30199955
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcatta-tattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||||| ||||| | | ||| ||||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
30200070 |
aaattggtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagtta-ttccagggaataatttttgcatccg |
30199972 |
T |
|
| Q |
109 |
ggaaacaaacaccccca |
125 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
30199971 |
tgaaacaaacgccccca |
30199955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 25012989 - 25013113
Alignment:
| Q |
1 |
ctaggaataaaaattggcaaccaaacacttttcttaaaaattcctaggaataaattctcattatattttcctgggaaagttaattccagggagaaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25012989 |
ctaggaataaaaattggcaaccaaacacttttcttaaaaattcctaagaataaattctcattatattttcctgggaaagttaattccaggaagaaatttt |
25013088 |
T |
|
| Q |
101 |
tgcatccgggaaacaaacaccccca |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
25013089 |
tgcatccgggaaacaaacaccccca |
25013113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 33520369 - 33520262
Alignment:
| Q |
19 |
aaccaaacacttttcttaaaaattcctaggaataaa-ttctcattat-attttc-ctgggaaagttaattccagggagaaatttttgcatccgggaaaca |
115 |
Q |
| |
|
||||| |||||||| | | ||||||||||||||||| |||||||||| |||||| ||||||| | || ||||||||| |||||||| |||| | ||||| |
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|
| T |
33520369 |
aaccatacacttttttgacaaattcctaggaataaaattctcattatgattttctctgggaatgata-ttccagggaataatttttgaatccagaaaaca |
33520271 |
T |
|
| Q |
116 |
aacaccccc |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
33520270 |
aacaccccc |
33520262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 40637172 - 40637056
Alignment:
| Q |
1 |
ctaggaataaaaattggcaaccaaacacttttctt-aaaaattcctaggaataaa-ttctcattatattttcctgggaaagttaattccagggagaaatt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
40637172 |
ctaggaataaaaattggcaaccaaacacttttcttgaaaaattcctaggaataaaattctcattatattttcatgggaaagttaactccagggagtaatt |
40637073 |
T |
|
| Q |
99 |
tttgcatccgggaaaca |
115 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
40637072 |
tttgcatctggaaaaca |
40637056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 12336536 - 12336650
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcatta-tattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||||| ||||| | | ||| ||||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
12336536 |
aaattggtaaccaaacacttttttaaaatattcctaggaatataattccaagaaatatattcctgggaaaatta-ttccagggaataatttttgcatccg |
12336634 |
T |
|
| Q |
109 |
ggaaacaaacaccccc |
124 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
12336635 |
tgaaacaaacgccccc |
12336650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 25503006 - 25502900
Alignment:
| Q |
19 |
aaccaaacacttttcttaaaaattcctaggaataaa-ttctcattat-attttcctgggaaagttaattccagggagaaatttttgcatccgggaaacaa |
116 |
Q |
| |
|
||||| |||||||| | | ||||| ||||||||||| |||||||||| |||||| |||||| | || ||||||||| |||||||| |||| | |||||| |
|
|
| T |
25503006 |
aaccatacacttttttgacaaatttctaggaataaaattctcattatgattttcttgggaatgata-ttccagggaataatttttgaatccagaaaacaa |
25502908 |
T |
|
| Q |
117 |
acaccccc |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
25502907 |
acaccccc |
25502900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32469975 - 32469892
Alignment:
| Q |
1 |
ctaggaataaaaattggcaaccaaacacttttctta-aaaattcctaggaat-aaattctcattatattttcctgggaaagtta |
82 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||| || || | ||||||||||||| |||||||||||||||| |
|
|
| T |
32469975 |
ctaggaataaaaataggcaaccaaacacttttcttaaaaaattcttatgagtaaaattctcattatgctttcctgggaaagtta |
32469892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 8732901 - 8733007
Alignment:
| Q |
19 |
aaccaaacacttttcttaaaaattcctaggaataaa-ttctcattat-attttcctgggaaagttaattccagggagaaatttttgcatccgggaaacaa |
116 |
Q |
| |
|
||||| |||||||| | | ||||| ||||||||||| |||||||||| |||||| |||||| | || ||||||||| |||||||| |||| | |||||| |
|
|
| T |
8732901 |
aaccatacacttttttgacaaatttctaggaataaaattctcattatgattttcttgggaatgata-ttccagggaataatttttgaatccagaaaacaa |
8732999 |
T |
|
| Q |
117 |
acaccccc |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
8733000 |
acaccccc |
8733007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 20321214 - 20321328
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcatta-tattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||||| ||||| | | ||| ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
20321214 |
aaattggtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagtta-ttccagggaataatttttgcatccg |
20321312 |
T |
|
| Q |
109 |
ggaaacaaacaccccc |
124 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20321313 |
tgaaacaaacaccccc |
20321328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 34151959 - 34152071
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcatta-tattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||||| ||||| | | ||| ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
34151959 |
aaattggtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagtta-ttccagggaataatttttgcatccg |
34152057 |
T |
|
| Q |
109 |
ggaaacaaacaccc |
122 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34152058 |
tgaaacaaacaccc |
34152071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 20267392 - 20267506
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcatta-tattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||||| ||||| | | ||| ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
20267392 |
aaattggtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagtta-ttccagggaataatttttgcatccg |
20267490 |
T |
|
| Q |
109 |
ggaaacaaacaccccc |
124 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
20267491 |
tgaaacaaacgccccc |
20267506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 21054021 - 21054135
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcatta-tattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||||| ||||| | | ||| ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
21054021 |
aaattggtaaccaaacacttttttaaaatattcctaggaatataattccaaggaatatattcctgggaaagtta-ttccagggaataatttttgcatccg |
21054119 |
T |
|
| Q |
109 |
ggaaacaaacaccccc |
124 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
21054120 |
tgaaacaaacgccccc |
21054135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 34917907 - 34918015
Alignment:
| Q |
11 |
aaattggcaaccaaacacttttcttaaaaattcctaggaata-aattctcat-tatattttcctgggaaagttaattccagggagaaatttttgcatccg |
108 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||| ||||| ||||| || |||| ||||||| |||||| |||||| ||| |||||||||||||| |
|
|
| T |
34917907 |
aaattggtaaccaaacacttttttaaaatattcctatgaatataattccaatgaatatattcctggaaaagtt-attccaaggaataatttttgcatccg |
34918005 |
T |
|
| Q |
109 |
ggaaacaaac |
118 |
Q |
| |
|
||||||||| |
|
|
| T |
34918006 |
tgaaacaaac |
34918015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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