View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_247 (Length: 257)
Name: NF0412_low_247
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_247 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
| Q |
57 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
154 |
Q |
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| T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 3762512 - 3762610
Alignment:
| Q |
159 |
cactgtcaccaacaacaggcatctccctacccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag |
257 |
Q |
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| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaag |
3762610 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 3745722 - 3745814
Alignment:
| Q |
165 |
caccaacaacaggcatctccctacccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag |
257 |
Q |
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| T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaag |
3745814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 3776599 - 3776691
Alignment:
| Q |
165 |
caccaacaacaggcatctccctacccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag |
257 |
Q |
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| T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaag |
3776691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 3751539 - 3751631
Alignment:
| Q |
165 |
caccaacaacaggcatctccctacccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag |
257 |
Q |
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| T |
3751539 |
caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaag |
3751631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 3780912 - 3781004
Alignment:
| Q |
165 |
caccaacaacaggcatctccctacccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag |
257 |
Q |
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| T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaag |
3781004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
| Q |
57 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
154 |
Q |
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| T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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