View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_249 (Length: 256)
Name: NF0412_low_249
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_249 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 35621698 - 35621920
Alignment:
| Q |
30 |
gttataagccgtactagcaccaaaaaatgcaatcatagctaacaccactttgattgctggtacattattttcaacgacaacacacatcacacaacaaatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35621698 |
gttataagccgtactagcaccaaaaaatgcaatcatagctaacaccactttgattgctggtacattattttcaacgacaacacacatcacacaacaaatt |
35621797 |
T |
|
| Q |
130 |
ccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagcactaaaaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35621798 |
ccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtatattgctacgcaagaaggtatttccattgaagcactaaaaa |
35621897 |
T |
|
| Q |
230 |
ctacagccaaataaatgttgaac |
252 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35621898 |
ctacagccaaataaatgttgaac |
35621920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 34262778 - 34262998
Alignment:
| Q |
31 |
ttataagccgtactagcaccaaaaaatgcaatcatagctaacaccactttgattgctggtacattattttcaacgacaacacacatcacacaacaaattc |
130 |
Q |
| |
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||||||||||||| ||| || ||||| |||| ||| |||||||||||||| | || |||||| |||| ||||| ||| ||||||||||||||||||||| |
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| T |
34262778 |
ttataagccgtacaagcgccgaaaaacgcaaccattgctaacaccactttaactgttggtactctattctcaacaacagcacacatcacacaacaaattc |
34262877 |
T |
|
| Q |
131 |
cacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagcactaaaaac |
230 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| || || |||||||||||||||||||||||||| |
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| T |
34262878 |
cacctaagattgagaaaacaagaattgaaggttttcttctatagttttccaagaaatatgttgctacacatgagggtatttccattgaagcactaaaaac |
34262977 |
T |
|
| Q |
231 |
tacagccaaataaatgttgaa |
251 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
34262978 |
cacagccaaataaatattgaa |
34262998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 14579570 - 14579790
Alignment:
| Q |
31 |
ttataagccgtactagcaccaaaaaatgcaatcatagctaacaccactttgattgctggtacattattttcaacgacaacacacatcacacaacaaattc |
130 |
Q |
| |
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||||||||||||| |||||| ||||| |||| ||| ||||| |||||||| |||||||| |||| || | ||| ||||||||||||||||||||| |
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| T |
14579570 |
ttataagccgtacaagcaccgaaaaacgcaaccattgctaaaaccactttagcagctggtactctattctccaaaacagcacacatcacacaacaaattc |
14579669 |
T |
|
| Q |
131 |
cacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagcactaaaaac |
230 |
Q |
| |
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||| |||||| || || |||||||||||| ||||||||||| |||||||||||| || ||||||| || ||||||| ||||||||||||||||||||| |
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| T |
14579670 |
cacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatgttgctacacaggaaggtaattccattgaagcactaaaaac |
14579769 |
T |
|
| Q |
231 |
tacagccaaataaatgttgaa |
251 |
Q |
| |
|
|||||||| ||||||||||| |
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| T |
14579770 |
cacagccaagtaaatgttgaa |
14579790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 14544017 - 14543797
Alignment:
| Q |
31 |
ttataagccgtactagcaccaaaaaatgcaatcatagctaacaccactttgattgctggtacattattttcaacgacaacacacatcacacaacaaattc |
130 |
Q |
| |
|
||||||||||||| ||| || ||||| |||| ||| ||||| |||||||| |||||||| |||| || | ||| ||||| ||||||||||||||| |
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| T |
14544017 |
ttataagccgtacaagctccgaaaaacgcaaccattgctaaaaccactttagcagctggtactctattctccaaaacagcacacttcacacaacaaattc |
14543918 |
T |
|
| Q |
131 |
cacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagcactaaaaac |
230 |
Q |
| |
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||| |||||| || || |||||||||||| ||||||||||| |||||||||||| || ||||||| || ||||||| ||||||||||||||||||||| |
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| T |
14543917 |
cacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatgttgctacacatgaaggtaattccattgaagcactaaaaac |
14543818 |
T |
|
| Q |
231 |
tacagccaaataaatgttgaa |
251 |
Q |
| |
|
|| ||||| ||||||||||| |
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|
| T |
14543817 |
cactgccaattaaatgttgaa |
14543797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 37577491 - 37577694
Alignment:
| Q |
31 |
ttataagccgtactagcaccaaaaaatgcaatcatagctaacaccactttgattgctggtacattattttcaacgacaacacacatcacacaacaaattc |
130 |
Q |
| |
|
|||||||||||| | | || |||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||| ||||||||||||| | |
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| T |
37577491 |
ttataagccgtataaacgccgaaaaatgcaaccattgctaacaccactttagctgctggtgctctattctcaacaacaacaca--tcacacaacaaatcc |
37577588 |
T |
|
| Q |
131 |
cacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagcactaaaaac |
230 |
Q |
| |
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||| |||||| |||||||||| ||||||||||||||||||||||||| || || ||| || ||||||||| |||||||||| ||||||| |
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| T |
37577589 |
cacctaagat---------aagaattgaaggttttcttctatagttttccaagaaatatgttactaaacataaaggtattttcattgaagcattaaaaac |
37577679 |
T |
|
| Q |
231 |
tacagccaaataaat |
245 |
Q |
| |
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|||||||||||||| |
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|
| T |
37577680 |
cacagccaaataaat |
37577694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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