View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_25 (Length: 451)

Name: NF0412_low_25
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_25
NF0412_low_25
[»] chr2 (1 HSPs)
chr2 (7-428)||(12101321-12101742)
[»] chr1 (3 HSPs)
chr1 (7-425)||(11780447-11780872)
chr1 (30-172)||(1625386-1625529)
chr1 (27-266)||(10425059-10425299)
[»] chr6 (1 HSPs)
chr6 (10-337)||(14977088-14977416)
[»] chr7 (1 HSPs)
chr7 (205-355)||(17158942-17159091)
[»] chr5 (3 HSPs)
chr5 (15-180)||(11724135-11724301)
chr5 (54-171)||(19069969-19070087)
chr5 (45-113)||(5782546-5782614)
[»] chr8 (1 HSPs)
chr8 (45-93)||(17458912-17458960)
[»] scaffold0021 (1 HSPs)
scaffold0021 (27-85)||(140665-140723)
[»] chr3 (2 HSPs)
chr3 (27-113)||(16313503-16313589)
chr3 (27-113)||(18494497-18494583)
[»] scaffold0012 (1 HSPs)
scaffold0012 (33-168)||(61087-61223)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 12101321 - 12101742
Alignment:
Q  7 atgagatccttgtagagcgtgagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataa 106  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  12101321 atgagatccttgtggagcgtgagggcttcacttttaaggtggaagtgcaatatgagaggagaccgttgttttgccatcactgttactccattgaacataa 12101420  T
Q  107 tgtctcctctgtcgatgggtaaatcctcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggctgagaaagcaccccctaaaacaactc 206  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12101421 tgtctcctctgtcgacggttacatcctcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggctgagaaagcaccccctaaaacaactc 12101520  T
Q  207 ggcagcacacagatggggaggcttccacttcagccaatggcagtacctggacttgggttctggttccgattacttcgatagtcaccactactcagagagt 306  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  12101521 gccagcacatagatggggaggcttccacttcagccaatggcagtacctggacttgggttccgattctgattacttcgatagtcaccactactcagagagt 12101620  T
Q  307 tctggtcacttctgccccttcaacactggctcagccttctcaggctatttcggcccctacttgctcacccatggggtcggttgttcactctaattcaata 406  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  12101621 tctggtcacttctgccccttcaacactggctcagccttctctggctattccggcccctacttgctcacccatggggtcggttgttcactctacttcaaca 12101720  T
Q  407 gttgatacttctcagatgatga 428  Q
    ||||||||||| ||||||||||    
T  12101721 gttgatacttcacagatgatga 12101742  T

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Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 11780872 - 11780447
Alignment:
Q  7 atgagatccttgtagagcgtgagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataa 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||    
T  11780872 atgagatccttgtggagcgtgagggcttcgcttttaaggtggaagtgcaatatgagaggagactattgtttttccatcactgttactccattggacataa 11780773  T
Q  107 tgtctcctct-gtcgatgggtaaatcctcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggctgagaaagcaccccctaaaacaact 205  Q
    |||||||||| | |||||| || |||||||||  ||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||| || ||||    
T  11780772 tgtctcctcttgccgatggatacatcctcaacaaccaaaggataaagatgatcgtgggaaacaaatcgttgtggctgagaaagcactccctacaataact 11780673  T
Q  206 cggcagcacacagatggggaggcttccacttcagccaatggcagtacctggacttgggttctggttccgattacttcgatagtcaccactactcagagag 305  Q
    || || |||||| |||||| |||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||||||||| |||||||||| |||||||||    
T  11780672 cgacaacacacaaatgggggggcttccacttcggccaatggaagtacttggacttaggttccggttccgattacttcgacagtcaccacttctcagagag 11780573  T
Q  306 ttctggtcacttctgccccttcaacactggctcagccttctcaggctatttcggccccta------cttgctcacccatggggtcggttgttcactctaa 399  Q
    ||| ||| ||| |||||||||||||||| |||| |||||||||||||||| ||| |||||      || |||||| |||||||||||||||| | ||||     
T  11780572 ttccggttactactgccccttcaacactagctccgccttctcaggctattccggaccctattattgctagctcacacatggggtcggttgttaattctac 11780473  T
Q  400 ttcaatagttgatacttctcagatga 425  Q
    ||||  ||||| ||||||||| ||||    
T  11780472 ttcagcagttgttacttctcatatga 11780447  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 1625529 - 1625386
Alignment:
Q  30 ggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcctc-tgtcgatgggtaa 128  Q
    ||||||||||| || ||||| || ||||||||| |||| | ||||||||| |||||||||| | | ||||  || ||||||||| | ||||| ||| ||     
T  1625529 ggcttcgctttcaaagtggaggttcaatatgagcggagaccgttgttttgtcatcactgtttcgctattgggcacaatgtctccacttgtcgttggttac 1625430  T
Q  129 atcctcaaccgccaaaggataaagatgatcgtggaaaacaaatt 172  Q
    |||| ||||| |||||||| ||  ||||||| || |||||||||    
T  1625429 atccacaaccaccaaaggacaagaatgatcgagggaaacaaatt 1625386  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 266
Target Start/End: Complemental strand, 10425299 - 10425059
Alignment:
Q  27 gagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcctc-tgtcgatggg 125  Q
    ||||| ||| |||| || ||||| || || ||||||||||| | ||||||||| || ||||||| ||||||||| || ||||||||| | ||| |||||     
T  10425299 gagggattcactttcaaagtggaggttcattatgagaggagaccgttgttttgtcaccactgtttctccattgagcacaatgtctccacttgtagatggt 10425200  T
Q  126 taaatcctcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggctgagaaagcaccccctaaaacaactcggcagcacacagatgggga 225  Q
    || |||| ||||| |||||| | ||    ||| | || |||||||||||| | |  |||  | ||||| |||||||| |||||||| |||  |||| ||     
T  10425199 tacatccacaaccaccaaagaacaagacagattgagggaaacaaattattattgtcgaggcatcacccactaaaacacctcggcagaacaatgatgcggg 10425100  T
Q  226 ggcttccacttcagccaatggcagtacctggacttgggttc 266  Q
     ||||||||||| |||| ||| || || ||||| |||||||    
T  10425099 tgcttccacttcggccattggtagcacttggacgtgggttc 10425059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 14977088 - 14977416
Alignment:
Q  10 agatccttgtagagcgtgagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgt 109  Q
    |||||||||| ||||| ||||| ||| |||| || |||||||| |||||||||||||| | |||||||||||||||| ||||||| |||| ||||||| |    
T  14977088 agatccttgtggagcgagagggattcactttcaaagtggaagttcaatatgagaggagaccgttgttttgccatcaccgttactctattggacataatat 14977187  T
Q  110 ctcctct-gtcgatgggtaaatcctcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggctgagaaagcaccccctaaaacaactcgg 208  Q
    |||| || |||| ||| ||| ||||||||||||||| |||||| |||||||||| |||||||||||||| | ||||  ||| ||||||||| || ||||     
T  14977188 ctccacttgtcgttggttaattcctcaaccgccaaatgataaaaatgatcgtggtaaacaaattattgtcgttgaggcagcgccccctaaaccatctcga 14977287  T
Q  209 cagcacacagatggggaggcttccacttcagccaatggcagtacctggacttgggttctggttccgattacttcgatagtcaccactactcagagagttc 308  Q
     |||| |  |||||||  |||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| | | || ||  ||||||||||||    
T  14977288 aagcagaatgatgggggagcttccacttcagccaatggcagtacttgtacttgggttccggttccgattacttcgacaattactacctctcagagagttc 14977387  T
Q  309 tggtcacttctgccccttcaacactggct 337  Q
      || ||||||||| || ||||| |||||    
T  14977388 cagttacttctgcctctgcaacattggct 14977416  T

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Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 205 - 355
Target Start/End: Complemental strand, 17159091 - 17158942
Alignment:
Q  205 tcggcagcacacagatggggaggcttccacttcagccaatggcagtacctggacttgggttctggttccgattacttcgatagtcaccactactcagaga 304  Q
    ||||||||||||| |||||| |||||| ||||  |||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||  |||||||    
T  17159091 tcggcagcacacatatgggg-ggcttcaactttggccaatggcagtacctcgacttgggttccggttccgattacttcaacagtcaccacttttcagaga 17158993  T
Q  305 gttctggtcacttctgccccttcaacactggctcagccttctcaggctatt 355  Q
    |||||||| ||| || |||||||||||||||||| | ||||||||||||||    
T  17158992 gttctggttactactaccccttcaacactggctctgtcttctcaggctatt 17158942  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 11724135 - 11724301
Alignment:
Q  15 cttgtagagcgtgagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcct 114  Q
    ||||| ||||| || ||||| ||||| || || || || ||||||||| |||| ||||||||||| |||||||| | ||| ||||  ||| ||||||||     
T  11724135 cttgttgagcgcgatggctttgctttcaaagttgaggtacaatatgagcggagactgttgttttgtcatcactgcttctctattgcgcatgatgtctcca 11724234  T
Q  115 c-tgtcgatgggtaaatcctcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggc 180  Q
    | ||||| ||| || |||| ||||| ||||| || ||  ||||||| || ||||||||| |||||||    
T  11724235 cttgtcgttggttacatccgcaaccaccaaaagacaagaatgatcgagggaaacaaattgttgtggc 11724301  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 19070087 - 19069969
Alignment:
Q  54 caatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcctc-tgtcgatgggtaaatcctcaaccgccaaaggataaag 152  Q
    ||||||||| |||| | ||| |||||||||||||||||||| ||||  || ||| ||||| | ||||| ||| || |||| ||||| |||||||| ||      
T  19070087 caatatgagcggagaccgttattttgccatcactgttactctattgggcacaatatctccacttgtcgttggttacatccgcaaccaccaaaggacaaga 19069988  T
Q  153 atgatcgtggaaaacaaat 171  Q
    ||||||| || ||||||||    
T  19069987 atgatcgagggaaacaaat 19069969  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 5782614 - 5782546
Alignment:
Q  45 gtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcc 113  Q
    ||||| || ||||||||| |||| | ||| |||||||||||||||||||| ||||  || |||||||||    
T  5782614 gtggaggtccaatatgagcggagaccgttattttgccatcactgttactctattgggcacaatgtctcc 5782546  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 17458912 - 17458960
Alignment:
Q  45 gtggaagtgcaatatgagaggagtctgttgttttgccatcactgttact 93  Q
    |||||||| |||||||||||||| | |||||||| ||||||||||||||    
T  17458912 gtggaagtacaatatgagaggagaccgttgtttttccatcactgttact 17458960  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 140723 - 140665
Alignment:
Q  27 gagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatca 85  Q
    ||||| |||||||||||||||||||| || |||||||| || |  ||||||||||||||    
T  140723 gaggggttcgcttttaaggtggaagttcagtatgagagaagacctttgttttgccatca 140665  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 16313503 - 16313589
Alignment:
Q  27 gagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcc 113  Q
    ||||| |||||||| || ||||| ||  ||||||||||||| | ||||||||| || ||||||| ||||||||  || |||||||||    
T  16313503 gagggattcgctttcaaagtggaggttaaatatgagaggagaccgttgttttgtcaccactgtttctccattgggcacaatgtctcc 16313589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 18494497 - 18494583
Alignment:
Q  27 gagggcttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcc 113  Q
    ||||| |||||||| || ||||| ||  ||||||||||||| | ||||||||| || ||||||| ||||||||  || |||||||||    
T  18494497 gagggattcgctttcaaagtggaggttaaatatgagaggagaccgttgttttgtcaccactgtttctccattgggcacaatgtctcc 18494583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 61223 - 61087
Alignment:
Q  33 ttcgcttttaaggtggaagtgcaatatgagaggagtctgttgttttgccatcactgttactccattgaacataatgtctcctc-tgtcgatgggtaaatc 131  Q
    ||||| || ||||| || |||||||||||||||  ||  || ||||| ||||||||||| || |||| ||| |||||||| || ||||| ||| || |||    
T  61223 ttcgccttcaaggttgaggtgcaatatgagaggcttccattattttgtcatcactgttattcaattggacacaatgtctcatcatgtcgttggttacatc 61124  T
Q  132 ctcaaccgccaaaggataaagatgatcgtggaaaaca 168  Q
    | ||||| || || |||||  |||||||||| |||||    
T  61123 cacaaccaccgaaagataagaatgatcgtgggaaaca 61087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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