View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_26 (Length: 447)
Name: NF0412_low_26
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Complemental strand, 20615377 - 20614972
Alignment:
| Q |
30 |
tctttgttattttaagtgtccttgctgaaattcatcaactaagagcaa-attctttttggctcatagatgttcggcggccagctgtgccaagatgggaaa |
128 |
Q |
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|||||||||| ||||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20615377 |
tctttgttatgttaagtgcccttgctcaaattcatcaactaagagccatattctttttggctcatagatgttcggcggccagctgtgccaagatgggaaa |
20615278 |
T |
|
| Q |
129 |
agttgttttgctcttcggtcagctcaattacatgggagaggatagttgaaaccaagaaatatatgtgtaagtacaacaatatagttagttgggatgattc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20615277 |
agttgttttgctcttcggtcagctcaattacatgggagaggatagttgaaaccaagaaatatatgtgtaagtacaacaatatagttaattgggatgattc |
20615178 |
T |
|
| Q |
229 |
tgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcccgacatgtacatt |
328 |
Q |
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| T |
20615177 |
tgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcccgacatgtacatt |
20615078 |
T |
|
| Q |
329 |
gacgatattgactggaattccagtgttgaccctgagcttcttctggacttggataatgtcacaacatttcctagtcaagaagaaagtaataagggggttg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20615077 |
gacgatattgactggaattccagtgttgaccctgagcttcttctggacttggataacgtcacaacatttcctagtcaagaagaaagtaataagggggttg |
20614978 |
T |
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| Q |
429 |
tgatct |
434 |
Q |
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|||||| |
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| T |
20614977 |
tgatct |
20614972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 37238188 - 37238124
Alignment:
| Q |
317 |
gacatgtacattgacgatattgactggaattccagtgttgaccctgagcttcttctggacttgga |
381 |
Q |
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| T |
37238188 |
gacatgtacattgacgatattgattggaactacaatgttaaccctgagcttcttttggatttgga |
37238124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 227 - 363
Target Start/End: Complemental strand, 35785966 - 35785830
Alignment:
| Q |
227 |
tctgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcccgacatgtaca |
326 |
Q |
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||||||| ||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||| |||| |
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| T |
35785966 |
tctgctgtcaaagaggcatttgacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgcaacataccattgcctgatcctaacatttaca |
35785867 |
T |
|
| Q |
327 |
ttgacgatattgactggaattccagtgttgaccctga |
363 |
Q |
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| T |
35785866 |
tcgacgatgtagattggaatgcaagtattgactctga |
35785830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 35755879 - 35755782
Alignment:
| Q |
218 |
tgggatgattctgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcc |
315 |
Q |
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|||||||| ||||||| ||||| ||||| |||||||||||| ||||||||||| || ||||| |||||||| || ||||||| || |||||||| |
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| T |
35755879 |
tgggatgactctgctgtaaaagaggcattcaacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgtgacataccattgcctgatcc |
35755782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 363
Target Start/End: Complemental strand, 35761037 - 35760892
Alignment:
| Q |
218 |
tgggatgattctgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcccg |
317 |
Q |
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||||| || ||||||| ||||| ||||||||||||||||||| || |||||||| || ||||| | |||| ||| ||||||| || |||||||||| |
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| T |
35761037 |
tgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacagattttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccg |
35760938 |
T |
|
| Q |
318 |
acatgtacattgacgatattgactggaattccagtgttgaccctga |
363 |
Q |
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||| ||||||| ||| | || |||||| | ||||| |||||||| |
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| T |
35760937 |
acactcacattgatgatgtagattggaatgcaagtgtggaccctga |
35760892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 35766520 - 35766423
Alignment:
| Q |
218 |
tgggatgattctgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcc |
315 |
Q |
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||||| || ||||||| ||||| ||||| |||||||| || | ||||||||||| |||||||| ||| |||| ||| ||||||| || |||||||| |
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| T |
35766520 |
tgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgacataccattgcctgatcc |
35766423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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