View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_260 (Length: 251)
Name: NF0412_low_260
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_260 |
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| [»] scaffold0522 (2 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2665396 - 2665638
Alignment:
| Q |
1 |
tgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttgaaagcttgaaaatgtaaacnnnnnnnnntcttgaattatatgagta |
100 |
Q |
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| T |
2665396 |
tgccttttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttgaaagcttgaaaatgtaaacaaaaaaaaatcttgaattatatgagta |
2665495 |
T |
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| Q |
101 |
gtaattaaagagtgacattatatgtaattgatggttattgtaagagttcaaaaat----aaataaataaatgatatttatcgtttttgtttaattttctt |
196 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2665496 |
gtaattaaagagtgacattatgtgtaattgatggttattgtaagagttcaaaaataaataaataaataaatgatatttatcgtttttgtttaattttctt |
2665595 |
T |
|
| Q |
197 |
aatgatgtattctttattgcgtgaataacatgtctgttagtat |
239 |
Q |
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| T |
2665596 |
aatgatgtattctttattgcgtgaataatatgtctgttagtat |
2665638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 468 - 420
Alignment:
| Q |
6 |
tttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttg |
54 |
Q |
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| T |
468 |
tttagtgtttaggtcttgattttcactttcatgtgaaaatatcgtgttg |
420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 361 - 280
Alignment:
| Q |
105 |
ttaaagagtgacattatatgtaattgatggttattgtaagagttcaaaaataaataaataaatgatatttatcgtttttgtttaa |
189 |
Q |
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||||||||||||||||| ||||| | |||||| ||||||||||| || | || ||||||| |||||||||||||||| |||| |
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| T |
361 |
ttaaagagtgacattatgtgtaactcatggttcttgtaagagtttaatatta---taataaataatatttatcgtttttgcttaa |
280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 21472239 - 21472287
Alignment:
| Q |
6 |
tttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttg |
54 |
Q |
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| T |
21472239 |
tttagtgtttaggtcttgattttcactttcgtgtgaaaatatggtgttg |
21472287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 19261975 - 19261895
Alignment:
| Q |
108 |
aagagtgacattatatgtaattgatggttattgtaagagttcaaaaataaataaataaatgatatttatcgtttttgtttaattt |
192 |
Q |
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|||||||||||||| |||||||||||||| || | |||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
19261975 |
aagagtgacattatgtgtaattgatggttcgtgaatgagttcaa----tattaaataaatgatatttgtcgtttttgtttaattt |
19261895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 4556 - 4604
Alignment:
| Q |
6 |
tttagtgtttagggcttgattttcactttaatgtgaaaatatggtgttg |
54 |
Q |
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||||||||||||| |||||| |||||||| |||||||||||||||||| |
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| T |
4556 |
tttagtgtttaggtcttgatattcactttcgtgtgaaaatatggtgttg |
4604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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