View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_267 (Length: 249)
Name: NF0412_low_267
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_267 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 30941819 - 30941977
Alignment:
| Q |
44 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaaaaacatgagac |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30941819 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
30941918 |
T |
|
| Q |
144 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttactta |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30941919 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttactta |
30941977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 37974937 - 37974990
Alignment:
| Q |
83 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaaaaac |
136 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||| | |||||| |
|
|
| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatacctaaaaaac |
37974990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 39556357 - 39556472
Alignment:
| Q |
71 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaaaaacatgagaccaccagttccactttcacagtgcaata |
170 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||| | |||||||| ||||||||||| || |||||| |
|
|
| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
|
| Q |
171 |
gcaaccatgttttgga |
186 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
39556457 |
ccaaccatgtgttgga |
39556472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 32002397 - 32002342
Alignment:
| Q |
74 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatactt |
129 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatactt |
32002342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 918 times since January 2019
Visitors: 3072