View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_268 (Length: 249)
Name: NF0412_low_268
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_268 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 30941915 - 30941819
Alignment:
| Q |
1 |
tcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgt |
97 |
Q |
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| T |
30941915 |
tcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgt |
30941819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
14 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
58 |
Q |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 39556422 - 39556357
Alignment:
| Q |
5 |
gttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgt |
70 |
Q |
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| T |
39556422 |
gttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagattcatagcggctaagtgt |
39556357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 32002342 - 32002397
Alignment:
| Q |
12 |
aagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
67 |
Q |
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| T |
32002342 |
aagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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