View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_271 (Length: 247)
Name: NF0412_low_271
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_271 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
| Q |
57 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
154 |
Q |
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| T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
| Q |
57 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
154 |
Q |
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| T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 3762512 - 3762600
Alignment:
| Q |
159 |
cactgtcaccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtcatagtacttccattatactttcct |
247 |
Q |
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| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttcct |
3762600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 3745722 - 3745804
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtcatagtacttccattatactttcct |
247 |
Q |
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| T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttcct |
3745804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 3776599 - 3776681
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtcatagtacttccattatactttcct |
247 |
Q |
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| T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttcct |
3776681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 3780912 - 3780994
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtcatagtacttccattatactttcct |
247 |
Q |
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| T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttcct |
3780994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 3751539 - 3751621
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtcatagtacttccattatactttcct |
247 |
Q |
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| T |
3751539 |
caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttcct |
3751621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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