View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_272 (Length: 247)
Name: NF0412_low_272
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_272 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39335303 - 39335085
Alignment:
| Q |
1 |
ataatagttttcatggaaaaatttaaattgctactatatagtataaataaataaaactttgtttatgcaaaaatgagagaagacacaatgaaactcactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39335303 |
ataatagttttcatggaaaaatttaaattgctactatatagtaaaaataaataaaactttgtttatgcaaaaatgagagaagacgcaatgaaactcactt |
39335204 |
T |
|
| Q |
101 |
cttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39335203 |
cttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatg |
39335104 |
T |
|
| Q |
201 |
actatcagagagtagaata |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
39335103 |
actatcagagagtagaata |
39335085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39346561 - 39346343
Alignment:
| Q |
1 |
ataatagttttcatggaaaaatttaaattgctactatatagtataaataaataaaactttgtttatgcaaaaatgagagaagacacaatgaaactcactt |
100 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
39346561 |
ataataatttccatagaaaaatttaaattgctatcgtatattatagataaatgaaactttgtttatataaaaatgagagaagacacaatgacactcactt |
39346462 |
T |
|
| Q |
101 |
cttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39346461 |
cttgcaaaaaatctgccactcctttcctatttggacatttaaaaccaattgatttgaaaaattcaagcacgtgttcccgaggaccttggtatataatgtg |
39346362 |
T |
|
| Q |
201 |
actatcagagagtagaata |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
39346361 |
actatcagagagtagaata |
39346343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39361112 - 39360898
Alignment:
| Q |
1 |
ataatagttttcatggaaaaatttaaattgctactatatagtataaataaataaaactttgtttatgcaaaaatgagagaagacacaatgaaactcactt |
100 |
Q |
| |
|
|||||| ||||||| | |||| |||| || ||| ||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| || ||||| |
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| T |
39361112 |
ataataattttcatagcaaaacttaagtttctatcatataatattaataaatgaaactttgtttatataaaaatgagagaagacacaatgacacacactt |
39361013 |
T |
|
| Q |
101 |
cttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatg |
200 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
39361012 |
cttgcaaaaaatctgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccggggaccttggtaaataatgtg |
39360913 |
T |
|
| Q |
201 |
actatcagagagtag |
215 |
Q |
| |
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||||||||||||||| |
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|
| T |
39360912 |
actatcagagagtag |
39360898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 39541320 - 39541470
Alignment:
| Q |
69 |
aaaaatgagagaagacacaatgaaactcacttcttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagc |
168 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
39541320 |
aaaaatgagagaagacacaatgacactcacttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccgattgattcgaaaaattcaagc |
39541419 |
T |
|
| Q |
169 |
acgtgttcccgaggaccttggtatataatatgactatcagagagtagaata |
219 |
Q |
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||||| || || ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
39541420 |
acgtgctcacggggaccttggtatataatgtgactatcagagagtagaata |
39541470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 39567371 - 39567521
Alignment:
| Q |
69 |
aaaaatgagagaagacacaatgaaactcacttcttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagc |
168 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
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| T |
39567371 |
aaaaatgagagaagacacaatgacactcacttcttgcaagaaatctgccactcctttcctatctggacatttaaaaccgattgattcaaaaaattcaagt |
39567470 |
T |
|
| Q |
169 |
acgtgttcccgaggaccttggtatataatatgactatcagagagtagaata |
219 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
39567471 |
acgtgttcccggggaccttggtatataatgcgactatcagagagtagaata |
39567521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 39550579 - 39550728
Alignment:
| Q |
70 |
aaaatgagagaagacacaatgaaactcacttcttgcaaaaaatccgccactcctttcctatttggacatttaaaaccaattgattcgaaaaattcaagca |
169 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39550579 |
aaaatgataaaagacacaatgacactcacttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagca |
39550678 |
T |
|
| Q |
170 |
cgtgttcccgaggaccttggtatataatatgactatcagagagtagaata |
219 |
Q |
| |
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|||| || || ||||||||||||||||| ||||||||||||||||||||| |
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| T |
39550679 |
cgtgctcacggggaccttggtatataatgtgactatcagagagtagaata |
39550728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 2884443 - 2884367
Alignment:
| Q |
133 |
ggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatgactatcaga |
209 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||| | ||||| ||||| |||||||| | ||| |||| |||||| |
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|
| T |
2884443 |
ggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcaga |
2884367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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